Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g072520.1.1 | Tomato | nucleus, plastid | 90.14 | 88.58 |
| PGSC0003DMT400051137 | Potato | nucleus | 63.73 | 53.55 |
| VIT_17s0000g00430.t01 | Wine grape | nucleus | 57.04 | 46.42 |
| KRH63842 | Soybean | nucleus | 49.3 | 40.46 |
| KRH54121 | Soybean | nucleus | 49.65 | 40.4 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 26.06 | 40.22 |
| KRH59766 | Soybean | nucleus | 46.83 | 38.89 |
| KRH41084 | Soybean | nucleus | 44.37 | 37.17 |
| Os09t0510500-01 | Rice | nucleus | 36.62 | 36.88 |
| EES14175 | Sorghum | nucleus | 38.03 | 36.86 |
| EER99171 | Sorghum | nucleus | 35.92 | 36.3 |
| CDY45806 | Canola | nucleus | 37.32 | 36.18 |
| TraesCS5B01G292100.1 | Wheat | nucleus | 34.86 | 35.87 |
| TraesCS5D01G300100.1 | Wheat | nucleus | 34.86 | 35.87 |
| HORVU7Hr1G055180.4 | Barley | nucleus, plastid | 36.97 | 35.71 |
| Bra022753.1-P | Field mustard | nucleus | 36.97 | 35.35 |
| TraesCS5A01G292900.1 | Wheat | nucleus | 34.86 | 35.23 |
| Zm00001d021086_P001 | Maize | nucleus, plastid | 35.56 | 35.19 |
| HORVU5Hr1G077390.1 | Barley | nucleus | 34.51 | 35.13 |
| CDX84885 | Canola | nucleus | 36.62 | 35.02 |
| Zm00001d031665_P001 | Maize | mitochondrion | 38.38 | 34.6 |
| AT5G50915.2 | Thale cress | nucleus | 34.15 | 33.92 |
| Os08t0536800-01 | Rice | cytosol, nucleus, plastid | 36.62 | 33.66 |
| PGSC0003DMT400004855 | Potato | nucleus | 26.06 | 33.48 |
| Os05t0103000-01 | Rice | nucleus | 39.79 | 33.33 |
| TraesCS7A01G263700.1 | Wheat | nucleus | 35.56 | 32.58 |
| Zm00001d006110_P002 | Maize | nucleus, plastid | 35.92 | 31.78 |
| Zm00001d049870_P001 | Maize | nucleus | 35.56 | 31.66 |
| TraesCS7B01G161700.3 | Wheat | nucleus, plastid | 37.32 | 31.64 |
| TraesCS7D01G264600.3 | Wheat | nucleus | 37.32 | 31.64 |
| PGSC0003DMT400058169 | Potato | nucleus | 27.11 | 28.73 |
| PGSC0003DMT400058204 | Potato | nucleus | 26.76 | 28.15 |
| PGSC0003DMT400040021 | Potato | nucleus | 28.17 | 26.4 |
| PGSC0003DMT400062844 | Potato | nucleus | 26.41 | 25.77 |
| PGSC0003DMT400012591 | Potato | nucleus | 28.87 | 21.47 |
| PGSC0003DMT400021130 | Potato | nucleus | 26.76 | 21.11 |
| PGSC0003DMT400051980 | Potato | mitochondrion, nucleus | 33.8 | 20.56 |
| PGSC0003DMT400042791 | Potato | nucleus | 31.69 | 20.5 |
| PGSC0003DMT400053639 | Potato | nucleus | 34.51 | 19.92 |
| PGSC0003DMT400011651 | Potato | nucleus | 28.87 | 19.85 |
| PGSC0003DMT400001888 | Potato | nucleus | 30.63 | 19.68 |
| PGSC0003DMT400004830 | Potato | nucleus | 30.99 | 19.01 |
| PGSC0003DMT400050585 | Potato | nucleus | 33.45 | 18.27 |
| PGSC0003DMT400022704 | Potato | nucleus | 32.04 | 17.01 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069568 | EnsemblPlantsGene:PGSC0003DMG400027042 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400027042 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000296E6B7 | UniProt:M1CKP3 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
BHLH transcription factor Upa20 [Source:PGSC_GENE;Acc:PGSC0003DMG400027042]
Coordinates
chr6:+:53292970..53295835
Molecular Weight (calculated)
31979.0 Da
IEP (calculated)
7.266
GRAVY (calculated)
-0.589
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANSNSFHL DSIFHVPIKL SGFLEEPNNM TCSTVLPNCV SQFYLQELSV NMSNNVHEIS QNEPSHVTNK TISSSLCSTQ SKNVREGDYG KRQKKRNGNV
101: KIEKKAKDNN KKKVPEEAPT GYVHVRARRG QATDSHSLAE RVRREKISER MKILQALVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLASLNPMYY
201: DFGMELDALM VKPDQSWSGL EGPLLENTTS SYPLLDSSTS HMFQQLHLPN SVSQDSGDDQ KQKMIINHSE LISNNNNLCS FPLI
101: KIEKKAKDNN KKKVPEEAPT GYVHVRARRG QATDSHSLAE RVRREKISER MKILQALVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLASLNPMYY
201: DFGMELDALM VKPDQSWSGL EGPLLENTTS SYPLLDSSTS HMFQQLHLPN SVSQDSGDDQ KQKMIINHSE LISNNNNLCS FPLI
001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQEEGEEREN FVDRSGFNNN NFCSFP
Arabidopsis Description
BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.