Factsheet for PGSC0003DMT400011651

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098620.1.1	Tomato	nucleus	90.56	92.57
CDY72360	Canola	cytosol	16.71	46.0
PGSC0003DMT400042791	Potato	nucleus	45.04	42.37
Bra037059.1-P	Field mustard	nucleus	27.12	39.16
CDY08308	Canola	nucleus	27.6	39.04
CDY25986	Canola	plastid	20.58	38.99
PGSC0003DMT400004855	Potato	nucleus	20.58	38.46
CDY64034	Canola	nucleus	28.09	37.78
CDY18099	Canola	nucleus	20.34	37.67
CDY33821	Canola	mitochondrion, plastid	17.68	37.24
Bra028335.1-P	Field mustard	nucleus	29.78	37.05
CDY56230	Canola	nucleus	29.06	36.04
CDX85122	Canola	nucleus	28.33	35.35
CDX77488	Canola	nucleus	27.84	34.95
Bra014972.1-P	Field mustard	nucleus	27.6	34.65
AT3G23690.1	Thale cress	nucleus	30.51	33.96
PGSC0003DMT400058204	Potato	nucleus	21.55	32.96
PGSC0003DMT400040021	Potato	nucleus	23.49	32.01
PGSC0003DMT400062844	Potato	nucleus	22.28	31.62
PGSC0003DMT400058169	Potato	nucleus	20.1	30.97
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	34.87	30.84
CDY61581	Canola	plastid	13.56	30.6
PGSC0003DMT400053639	Potato	nucleus	36.08	30.28
PGSC0003DMT400069568	Potato	nucleus	19.85	28.87
PGSC0003DMT400021130	Potato	nucleus	24.46	28.06
PGSC0003DMT400051137	Potato	nucleus	22.28	27.22
PGSC0003DMT400012591	Potato	nucleus	24.94	26.96
PGSC0003DMT400001888	Potato	nucleus	26.63	24.89
VIT_05s0029g00390.t01	Wine grape	nucleus	32.45	24.63
PGSC0003DMT400004830	Potato	nucleus	26.88	23.97
PGSC0003DMT400050585	Potato	nucleus	30.02	23.85
PGSC0003DMT400022704	Potato	nucleus	30.27	23.36

Protein Annotations

EntrezGene:102603736	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZZX3
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400004580	PGSC:PGSC0003DMG400004580	EnsemblPlants:PGSC0003DMT400011651	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295E8BE	RefSeq:XP_006349897.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Transcription factor bHLH62 [Source:PGSC_GENE;Acc:PGSC0003DMG400004580]

Coordinates

chr12:+:59462897..59465929

Molecular Weight (calculated)

46701.2 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.854

Length

413 amino acids

Sequence
(BLAST)

001: MDKKNLFLNN VNTMNELNCT STNFYNPNWE NSSMDYQNDN ILSSNSNNFG DNFGEISPNS FVDSNNNSCY TTPLNSPPRL NLSNFDHQIK GNFPNISNNL
101: PHFSANLGNF SCFGGNNLVG NETKFVQNLE SCKLSRNKYV KESEFGDSRE NSSISQQIQL EEIGIKCPND ANSKKGKSIP KRKAKEITPK DDNVSTQNNE
201: SSSKKVKTDD KNEENQKPQE PLKDYIHVRA RRGQATDAHS LAERVRREKI GERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQCQVEF LSMKLSNMNP
301: TTDFNAESLT SKNMFQSVGS LHHNMNSSES TIQEFPYGFQ SQQGPNLQSF LPKETEFPFK VNPHLDGFVE QTPQVATFFE DHDLHSFIHM GFGQIQAQNY
401: HGNVPTAQMK AEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.