Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077480.2.1 | Tomato | nucleus | 98.69 | 98.69 |
| VIT_18s0001g08600.t01 | Wine grape | nucleus | 58.9 | 52.33 |
| CDY31048 | Canola | nucleus | 38.48 | 46.82 |
| Bra031700.1-P | Field mustard | nucleus | 39.27 | 45.87 |
| KRG88634 | Soybean | nucleus, plastid | 51.57 | 45.29 |
| KRH15460 | Soybean | nucleus | 50.79 | 45.22 |
| CDY20659 | Canola | nucleus | 39.27 | 45.05 |
| KRH52141 | Soybean | nucleus | 34.82 | 44.48 |
| CDY53834 | Canola | nucleus | 39.79 | 43.8 |
| AT1G10120.1 | Thale cress | nucleus | 41.62 | 43.44 |
| CDY22605 | Canola | nucleus | 40.05 | 43.34 |
| Bra018461.1-P | Field mustard | nucleus | 36.39 | 43.17 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 25.39 | 42.92 |
| KRH61450 | Soybean | nucleus | 41.62 | 42.29 |
| Bra019962.1-P | Field mustard | nucleus | 36.13 | 40.71 |
| CDY63738 | Canola | nucleus | 36.13 | 40.35 |
| Os03t0728900-00 | Rice | cytosol, nucleus | 26.96 | 38.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.44 | 35.69 |
| OQU91059 | Sorghum | nucleus | 29.32 | 35.56 |
| CDY57925 | Canola | nucleus | 36.39 | 34.92 |
| PGSC0003DMT400004855 | Potato | nucleus | 20.16 | 34.84 |
| TraesCS4D01G058900.1 | Wheat | nucleus | 28.8 | 34.81 |
| Zm00001d033870_P001 | Maize | nucleus | 28.8 | 34.06 |
| TraesCS4A01G255800.3 | Wheat | nucleus | 28.8 | 33.85 |
| HORVU4Hr1G009970.28 | Barley | nucleus | 28.53 | 33.75 |
| TraesCS4B01G059000.1 | Wheat | nucleus | 28.27 | 33.44 |
| PGSC0003DMT400062844 | Potato | nucleus | 23.04 | 30.24 |
| PGSC0003DMT400058169 | Potato | nucleus | 21.2 | 30.22 |
| PGSC0003DMT400058204 | Potato | nucleus | 20.42 | 28.89 |
| PGSC0003DMT400069568 | Potato | nucleus | 21.47 | 28.87 |
| PGSC0003DMT400040021 | Potato | nucleus | 22.77 | 28.71 |
| Zm00001d013357_P001 | Maize | nucleus | 24.35 | 26.72 |
| PGSC0003DMT400051137 | Potato | nucleus | 22.77 | 25.74 |
| PGSC0003DMT400011651 | Potato | nucleus | 26.96 | 24.94 |
| PGSC0003DMT400042791 | Potato | nucleus | 28.27 | 24.6 |
| PGSC0003DMT400021130 | Potato | nucleus | 23.04 | 24.44 |
| PGSC0003DMT400050585 | Potato | nucleus | 33.25 | 24.42 |
| PGSC0003DMT400001888 | Potato | nucleus | 27.49 | 23.76 |
| PGSC0003DMT400053639 | Potato | nucleus | 29.84 | 23.17 |
| PGSC0003DMT400051980 | Potato | mitochondrion, nucleus | 28.01 | 22.91 |
| PGSC0003DMT400022704 | Potato | nucleus | 31.94 | 22.8 |
| PGSC0003DMT400004830 | Potato | nucleus | 27.23 | 22.46 |
Protein Annotations
| EntrezGene:102580436 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1A1H5 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400004922 | PGSC:PGSC0003DMG400004922 | EnsemblPlants:PGSC0003DMT400012591 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002953F78 | RefSeq:XP_006356834.1 |
| RefSeq:XP_015168609.1 | RefSeq:XP_015168610.1 | RefSeq:XP_015168611.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
Basic helix-loop-helix protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004922]
Coordinates
chr4:-:66564766..66568972
Molecular Weight (calculated)
41629.8 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.679
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTKETGSFN CPSTGMNRAD SMPNVDPFSG SGWDPLLSLN QKGGFKGSSV VGHNEFVNLP YQSSQFAHYP SDSNLAEMVP KIPAFGNESY SELVNTFPLQ
101: EQLRGANCYA NYVKNRGIST EGECQISGEG AVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH KTDQNVSSNL RSKQAGKQVK
201: DDSDGGEPPK DSYVHVRAKR GQATNSHSLA ERVRRERISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK
301: EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPGTT PPFHPLPQNV WDNELQSLLQ MGFDSTSSMN NMGPNGRSKL DL
101: EQLRGANCYA NYVKNRGIST EGECQISGEG AVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH KTDQNVSSNL RSKQAGKQVK
201: DDSDGGEPPK DSYVHVRAKR GQATNSHSLA ERVRRERISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK
301: EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPGTT PPFHPLPQNV WDNELQSLLQ MGFDSTSSMN NMGPNGRSKL DL
001: MGGESNEGGE MGFKHGDDES GGISRVGITS MPLYAKADPF FSSADWDPVV NAAAAGFSSS HYHPSMAMDN PGMSCFSHYQ PGSVSGFAAD MPASLLPFGD
101: CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK
201: ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT
301: PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL
101: CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK
201: ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT
301: PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL
Arabidopsis Description
BHLH74Transcription factor bHLH74 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.