Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g097870.2.1 | Tomato | nucleus | 95.44 | 97.22 |
| CDY72360 | Canola | cytosol | 17.77 | 52.0 |
| PGSC0003DMT400004855 | Potato | nucleus | 23.46 | 46.61 |
| CDY25986 | Canola | plastid | 22.78 | 45.87 |
| PGSC0003DMT400011651 | Potato | nucleus | 42.37 | 45.04 |
| Bra037059.1-P | Field mustard | nucleus | 28.7 | 44.06 |
| CDY08308 | Canola | nucleus | 28.47 | 42.81 |
| CDY18099 | Canola | nucleus | 21.41 | 42.15 |
| Bra028335.1-P | Field mustard | nucleus | 31.66 | 41.87 |
| CDY64034 | Canola | nucleus | 28.93 | 41.37 |
| CDX77488 | Canola | nucleus | 30.52 | 40.73 |
| CDX85122 | Canola | nucleus | 30.52 | 40.48 |
| Bra014972.1-P | Field mustard | nucleus | 30.3 | 40.43 |
| CDY56230 | Canola | nucleus | 30.52 | 40.24 |
| PGSC0003DMT400053639 | Potato | nucleus | 44.87 | 40.04 |
| PGSC0003DMT400058204 | Potato | nucleus | 23.92 | 38.89 |
| CDY33821 | Canola | mitochondrion, plastid | 17.31 | 38.78 |
| PGSC0003DMT400062844 | Potato | nucleus | 24.83 | 37.46 |
| AT3G23690.1 | Thale cress | nucleus | 31.44 | 37.2 |
| CDY61581 | Canola | plastid | 15.49 | 37.16 |
| PGSC0003DMT400051980 | Potato | mitochondrion, nucleus | 38.04 | 35.76 |
| PGSC0003DMT400058169 | Potato | nucleus | 21.41 | 35.07 |
| PGSC0003DMT400040021 | Potato | nucleus | 23.69 | 34.32 |
| PGSC0003DMT400069568 | Potato | nucleus | 20.5 | 31.69 |
| PGSC0003DMT400051137 | Potato | nucleus | 24.15 | 31.36 |
| PGSC0003DMT400021130 | Potato | nucleus | 25.51 | 31.11 |
| PGSC0003DMT400012591 | Potato | nucleus | 24.6 | 28.27 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 34.85 | 28.12 |
| PGSC0003DMT400001888 | Potato | nucleus | 27.79 | 27.6 |
| PGSC0003DMT400050585 | Potato | nucleus | 32.35 | 27.31 |
| PGSC0003DMT400004830 | Potato | nucleus | 28.47 | 27.0 |
| PGSC0003DMT400022704 | Potato | nucleus | 30.52 | 25.05 |
Protein Annotations
| EntrezGene:102599641 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1BDN1 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400016608 | PGSC:PGSC0003DMG400016608 | EnsemblPlants:PGSC0003DMT400042791 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000295B736 | RefSeq:XP_006358792.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016608]
Coordinates
chr9:-:60340471..60343243
Molecular Weight (calculated)
49245.3 Da
IEP (calculated)
6.416
GRAVY (calculated)
-0.825
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGNLFIND DNTTYEHLQN CFFNPNLDNN NSDPFESALS SMVSSPISIP NNNSGGDNFV LRELIGRLGS ICNNNNNNSS STNNSCYTTP LNSPPKLNLS
101: MRGNLPPTQF TTDPGFAERA ARFSCFATNL ESGQLSSNHS IKIQDFKDVN LVQRNSEFGD SRENSSLSEQ IIGQNDTNSR KRKSISKGKS SKIVNEKNES
201: NAKRSKSEEN ENKVTKEEEK AVLEENKDNQ KATEPPKDYI HVRARRGQAT DAHSLAERVR REKISERMKL LQDLVPGCNK VTGKAVMLDE IINYVQSLQR
301: QVEFLSMKLA TVNPRMDFNM EALLSKDMFQ SRGSLAHNMY QSETSTQGFP YGFQSQPNQN YHKGTEFPFP INSLNPNLIR NSSMQLPPLD GFVEPTPQVP
401: TFFEDDLNSV VQMGFGQNQN QSFHSVAGNV PNSQMKVEL
101: MRGNLPPTQF TTDPGFAERA ARFSCFATNL ESGQLSSNHS IKIQDFKDVN LVQRNSEFGD SRENSSLSEQ IIGQNDTNSR KRKSISKGKS SKIVNEKNES
201: NAKRSKSEEN ENKVTKEEEK AVLEENKDNQ KATEPPKDYI HVRARRGQAT DAHSLAERVR REKISERMKL LQDLVPGCNK VTGKAVMLDE IINYVQSLQR
301: QVEFLSMKLA TVNPRMDFNM EALLSKDMFQ SRGSLAHNMY QSETSTQGFP YGFQSQPNQN YHKGTEFPFP INSLNPNLIR NSSMQLPPLD GFVEPTPQVP
401: TFFEDDLNSV VQMGFGQNQN QSFHSVAGNV PNSQMKVEL
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.