Factsheet for PGSC0003DMT400022704

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010130.2.1	Tomato	nucleus	91.03	90.69
PGSC0003DMT400050585	Potato	nucleus	62.24	64.04
PGSC0003DMT400004830	Potato	nucleus	52.34	60.48
VIT_01s0010g00740.t01	Wine grape	nucleus	48.78	55.65
Bra038336.1-P	Field mustard	plastid	32.52	47.67
KRH75189	Soybean	nucleus	47.85	46.55
KRH71031	Soybean	nucleus	47.48	46.1
AT1G68920.1	Thale cress	nucleus	40.75	44.86
Bra004348.1-P	Field mustard	nucleus	39.81	44.75
GSMUA_Achr6P36210_001	Banana	nucleus	22.8	44.36
CDX95974	Canola	nucleus	39.63	44.26
CDY33568	Canola	nucleus	39.81	44.19
CDY45835	Canola	nucleus	37.38	44.15
CDX81575	Canola	nucleus	38.32	43.16
Zm00001d020826_P001	Maize	nucleus	33.08	40.78
TraesCS5D01G258300.1	Wheat	nucleus	31.78	40.09
TraesCS5B01G248600.1	Wheat	nucleus	31.78	40.09
TraesCS5A01G250600.1	Wheat	nucleus	31.78	40.0
KXG35834	Sorghum	nucleus	32.52	39.82
Os09t0474100-01	Rice	nucleus	31.78	39.72
PGSC0003DMT400004855	Potato	nucleus	15.89	38.46
GSMUA_Achr8P24490_001	Banana	nucleus	29.35	37.92
Zm00001d005964_P002	Maize	nucleus	31.96	37.75
Os06t0275600-01	Rice	cytosol, nucleus	30.09	36.84
PGSC0003DMT400058169	Potato	nucleus	17.76	35.45
PGSC0003DMT400040021	Potato	nucleus	20.0	35.31
GSMUA_Achr9P28060_001	Banana	nucleus	20.19	35.29
GSMUA_Achr9P18510_001	Banana	nucleus	20.19	34.62
PGSC0003DMT400058204	Potato	nucleus	16.82	33.33
PGSC0003DMT400062844	Potato	nucleus	17.57	32.3
PGSC0003DMT400069568	Potato	nucleus	17.01	32.04
PGSC0003DMT400012591	Potato	nucleus	22.8	31.94
PGSC0003DMT400053639	Potato	nucleus	28.41	30.89
GSMUA_Achr3P10600_001	Banana	nucleus	26.36	30.59
PGSC0003DMT400042791	Potato	nucleus	25.05	30.52
PGSC0003DMT400011651	Potato	nucleus	23.36	30.27
PGSC0003DMT400051137	Potato	nucleus	19.07	30.18
TraesCS7A01G211900.1	Wheat	nucleus	23.93	29.09
TraesCS7D01G213500.1	Wheat	nucleus	23.74	28.86
HORVU0Hr1G020200.1	Barley	nucleus	23.55	28.64
TraesCS7B01G118800.1	Wheat	nucleus	23.55	28.64
OQU81018	Sorghum	nucleus	20.0	28.53
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	24.3	27.84
PGSC0003DMT400021130	Potato	nucleus	18.32	27.22
PGSC0003DMT400001888	Potato	nucleus	22.43	27.15
Os08t0487700-00	Rice	nucleus	16.64	25.95

Protein Annotations

EntrezGene:102585051	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1AH39
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400008805	PGSC:PGSC0003DMG400008805	EnsemblPlants:PGSC0003DMT400022704	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002951E04	RefSeq:XP_006367876.1	RefSeq:XP_006367877.1
RefSeq:XP_015161226.1	RefSeq:XP_015161227.1	InterPro:bHLH_dom	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008805]

Coordinates

chr00:-:29078066..29082987

Molecular Weight (calculated)

58735.9 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.759

Length

535 amino acids

Sequence
(BLAST)

001: MDMGSKNDTQ GQKRNKDAAN FQSPNMSLDW QLSGSNLTNA SMGMIPNSNP LVDSVFPTIW DRPTNSPQLN FYGNNAQTNP CTMNQHEIAA IGLGPARGVM
101: SWNPPNAMLK GAMFVPPIPG MIPQSLAQLP ADSGFIERAA RFSCFSGGNF SDMMNRPLSV PESTKPCYRG LAPTWRTEEV LASNGLNSPS AVDPRKQNIR
201: SGVDSSKDVY LPHENKTHEQ SPLKNEKKNE IFARSQDEGK ESVGLSGNES DEPECSGRQE EMESAGLESS AKGLGSRKRK KYSQGTELDR MKGVQQLPAE
301: PDKELTKTQK GDGSLHSPSS KHGGKNSKQR SQSSDPPKEE YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC DKVTGKAVML DEIINYVQSL
401: QRQVEFLSMK LSTVNLRLDF NLDGVLAKDP QAGPSSSLAF PPDYMTMTYA SLHGWQSGLL QSGLPGDGNC IDAFRRSINS QFSTMSGGYR DPSSQVPNVW
501: DDQLHNVVDM GFNSTAPLDC QDLSSLPPDQ MKTEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.