Factsheet for TraesCS5A01G250600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G248600.1	Wheat	nucleus	98.59	98.82
TraesCS5D01G258300.1	Wheat	nucleus	98.35	98.58
Os09t0474100-01	Rice	nucleus	78.59	78.04
Zm00001d020826_P001	Maize	nucleus	79.29	77.65
KXG35834	Sorghum	nucleus	79.53	77.35
Zm00001d005964_P002	Maize	nucleus	71.76	67.33
GSMUA_Achr6P36210_001	Banana	nucleus	29.88	46.18
Bra038336.1-P	Field mustard	plastid	33.18	38.63
VIT_01s0010g00740.t01	Wine grape	nucleus	42.35	38.38
GSMUA_Achr8P24490_001	Banana	nucleus	36.94	37.92
GSMUA_Achr9P28060_001	Banana	nucleus	24.71	34.31
Solyc05g010610.2.1	Tomato	nucleus	41.65	34.24
CDY33568	Canola	nucleus	38.59	34.02
PGSC0003DMT400050585	Potato	nucleus	41.41	33.85
Bra004348.1-P	Field mustard	nucleus	37.88	33.82
CDX95974	Canola	nucleus	38.12	33.82
CDY45835	Canola	nucleus	36.0	33.77
GSMUA_Achr9P18510_001	Banana	nucleus	24.71	33.65
KRH75189	Soybean	nucleus	42.59	32.91
PGSC0003DMT400004830	Potato	nucleus	35.76	32.83
CDX81575	Canola	nucleus	36.24	32.42
KRH71031	Soybean	nucleus	41.88	32.3
PGSC0003DMT400022704	Potato	nucleus	40.0	31.78
AT1G68920.1	Thale cress	nucleus	36.24	31.69
Solyc01g010130.2.1	Tomato	nucleus	39.76	31.47
TraesCS7A01G403900.1	Wheat	cytosol	11.29	31.17
TraesCS4A01G255800.3	Wheat	nucleus	23.53	30.77
TraesCS5A01G279200.2	Wheat	nucleus	27.53	30.31
TraesCS7A01G256200.3	Wheat	nucleus	28.24	30.23
TraesCS5A01G292900.1	Wheat	nucleus	19.29	29.18
GSMUA_Achr3P10600_001	Banana	nucleus	31.53	29.07
TraesCS3A01G421400.1	Wheat	nucleus	29.18	28.38
Solyc04g005220.1.1	Tomato	nucleus	27.53	27.92
TraesCS7A01G211900.1	Wheat	nucleus	28.0	27.05
TraesCS6A01G273000.2	Wheat	nucleus	22.82	26.87
TraesCS7A01G263700.1	Wheat	nucleus	19.53	26.77
TraesCS2A01G275600.1	Wheat	nucleus	22.59	23.65

Protein Annotations

EnsemblPlants:TraesCS5A01G250600.1	EnsemblPlantsGene:TraesCS5A01G250600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF182	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr5A:+:466026209..466028645

Molecular Weight (calculated)

44550.2 Da

IEP (calculated)

6.876

GRAVY (calculated)

-0.582

Length

425 amino acids

Sequence
(BLAST)

001: MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGGFSAH HHQQHPHMMD SFASGMWPAA SQHGAGFLAP VPGFLPPPGL GGHFPVDSGF IERAARSSCF
101: VGPGSGGGMM GAGAFGGAGD QHMGSAFGEG YLDHRRKEGG DKAEPELAGS GGVPSSEAAG GDCSSKGSDS KKRRRPSEVM GGDQVQSSNV AADSANESAQ
201: SKDKGEESSP ATGTTTGGKS KGKGAKESSE KEDYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL
301: SMKLATVNPR LDLNIEGLLS KDLLRFPGVS SSSMGFSPEM MHPQLQLSQP GLMQGGAAAM ANSDVFRRIM QAQLGAKDGS HSQMAHALNG PFSDHVAQMA
401: YPSMGSSHSH SQDLSIRPSQ DAYQM

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.