Factsheet for TraesCS3A01G421400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G417300.2	Wheat	nucleus	93.82	85.59
TraesCS3B01G457400.1	Wheat	nucleus	92.45	85.23
Os01t0915600-01	Rice	nucleus	75.97	69.02
EES04098	Sorghum	nucleus	75.74	68.39
Zm00001d042373_P002	Maize	nucleus	72.08	68.03
Zm00001d012067_P003	Maize	nucleus	72.31	65.83
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	91.3	62.74
TraesCS4A01G255800.3	Wheat	nucleus	25.17	33.85
TraesCS2A01G275600.1	Wheat	nucleus	30.43	32.76
PGSC0003DMT400053639	Potato	nucleus	34.78	30.89
Solyc09g057710.2.1	Tomato	nucleus	33.18	30.59
TraesCS7A01G256200.3	Wheat	nucleus	27.69	30.48
TraesCS7A01G403900.1	Wheat	cytosol	10.53	29.87
TraesCS7A01G263700.1	Wheat	nucleus	20.82	29.35
TraesCS5A01G250600.1	Wheat	nucleus	28.38	29.18
TraesCS6A01G273000.2	Wheat	nucleus	23.8	28.81
TraesCS5A01G279200.2	Wheat	nucleus	24.94	28.24
TraesCS5A01G292900.1	Wheat	nucleus	18.08	28.11
GSMUA_Achr10P...	Banana	nucleus	27.0	27.9
GSMUA_Achr7P22770_001	Banana	nucleus	26.77	26.47
TraesCS7A01G211900.1	Wheat	nucleus	25.86	25.68
GSMUA_Achr7P02770_001	Banana	nucleus	26.77	23.98
GSMUA_Achr4P16120_001	Banana	nucleus	24.94	23.85

Protein Annotations

EnsemblPlants:TraesCS3A01G421400.1	EnsemblPlantsGene:TraesCS3A01G421400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr3A:+:662931519..662933524

Molecular Weight (calculated)

46093.3 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.567

Length

437 amino acids

Sequence
(BLAST)

001: MASSPASNSA AATEGLALHG ISPRPQPHSP TKLNLSMMGQ YRHHHHHSPY PPPPPQVGGA GLPTLENLMP MGSLDQFLAD PGFAERAARL SGFGPAQFGL
101: PDDGPVGALK ELELGSARDD SSVSDPASAG AGMALKGASD SNARKRKAGG GGSKGKGKDA SVSTTSAKDL LAKEDSASKR CRSMSMEEAE ENSGKGKAAQ
201: SSSENGGRRQ GKDGASKLPE PPKDFIHVRA RRGEATDSHS LAERVRREKI SQRMKLLQDL VPGCNKVVGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP
301: QLDFNSLPSL LAKDMQQQSC GQLQQGSSHF FPLDASGAPL PYMGGQGSSD PLGCGMSDGG GMGDDHGAMH PLDQAFCRPM GSQQQHFLSD AAASQVGAFW
401: QDLQSVVQMD MGQSQEIATS SNSYDGSLQT VHMKMEL

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.