Factsheet for TraesCS4A01G255800.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G058900.1	Wheat	nucleus	94.77	97.47
TraesCS4B01G059000.1	Wheat	nucleus	96.31	96.9
HORVU4Hr1G009970.28	Barley	nucleus	92.92	93.5
OQU91059	Sorghum	nucleus	77.85	80.32
Os03t0728900-00	Rice	cytosol, nucleus	64.92	78.15
Zm00001d033870_P001	Maize	nucleus	77.23	77.71
Zm00001d013357_P001	Maize	nucleus	68.31	63.79
GSMUA_Achr1P27010_001	Banana	nucleus	28.62	41.15
CDY31048	Canola	nucleus	32.92	34.08
GSMUA_AchrUn_...	Banana	nucleus	29.23	33.57
CDY20659	Canola	nucleus	33.54	32.73
Bra031700.1-P	Field mustard	nucleus	32.92	32.72
Bra018461.1-P	Field mustard	nucleus	32.31	32.61
AT1G10120.1	Thale cress	nucleus	36.31	32.24
CDY22605	Canola	nucleus	34.77	32.01
CDY63738	Canola	nucleus	33.54	31.87
CDY53834	Canola	nucleus	33.85	31.7
Bra019962.1-P	Field mustard	nucleus	32.62	31.27
Solyc04g077480.2.1	Tomato	nucleus	34.46	29.32
PGSC0003DMT400012591	Potato	nucleus	33.85	28.8
KRH52141	Soybean	nucleus	26.15	28.43
KRH61450	Soybean	nucleus	32.0	27.66
CDY57925	Canola	nucleus	33.23	27.14
TraesCS7A01G263700.1	Wheat	nucleus	25.85	27.1
TraesCS5A01G292900.1	Wheat	nucleus	23.08	26.69
TraesCS7A01G403900.1	Wheat	cytosol	12.62	26.62
KRH15460	Soybean	nucleus	34.46	26.11
VIT_18s0001g08600.t01	Wine grape	nucleus	34.46	26.05
KRG88634	Soybean	nucleus, plastid	34.46	25.75
TraesCS3A01G421400.1	Wheat	nucleus	33.85	25.17
TraesCS5A01G279200.2	Wheat	nucleus	29.85	25.13
TraesCS6A01G273000.2	Wheat	nucleus	27.08	24.38
TraesCS2A01G275600.1	Wheat	nucleus	29.85	23.89
TraesCS7A01G256200.3	Wheat	nucleus	28.92	23.68
TraesCS5A01G250600.1	Wheat	nucleus	30.77	23.53
TraesCS7A01G211900.1	Wheat	nucleus	30.77	22.73

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0009628	GO:GO:0009637	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF182	SMART:SM00353	SUPFAM:SSF47459
EnsemblPlantsGene:TraesCS4A01G255800	EnsemblPlants:TraesCS4A01G255800.3	InterPro:bHLH_dom	TIGR:cd00083	:	:

Description

No Description!

Coordinates

chr4A:+:567651689..567653351

Molecular Weight (calculated)

35786.2 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.662

Length

325 amino acids

Sequence
(BLAST)

001: MYSGQQSDQG PAANSGKEFL EGNWGSVAMH QKMGYDSAAY GFQAYGMELE ERPGLYRSSA GAFSQNIQMS DEHSGGVKKR KGTDDCIALL NPSASSKNVG
101: DQQTEVSSQP ERNSVERDNR KISPKTQSKE DSSDGDGTKE NYVHFRAKRG QATNSHSLAE RLRRKKISEK MKLLQDLVPG CNKITGKAVM LDEIINYVQS
201: LQQQVEFLSM KLATVNPELG FDIEQILSKQ MMLSQDRHLG FYGADPGSSA LIAHFNQGMM HPDMMCNASN PAGALHGTIH DISMMNQMPE MWETLQNIPH
301: MNFNPAVAAD SSTNNAGICP VKIEQ

Best Arabidopsis Sequence Match ( AT1G10120.1 )
(BLAST)

001: MGGESNEGGE MGFKHGDDES GGISRVGITS MPLYAKADPF FSSADWDPVV NAAAAGFSSS HYHPSMAMDN PGMSCFSHYQ PGSVSGFAAD MPASLLPFGD
101: CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK
201: ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT
301: PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL

Arabidopsis Description

BHLH74Transcription factor bHLH74 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.