Factsheet for Os03t0728900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G058900.1	Wheat	nucleus	78.52	67.09
OQU91059	Sorghum	nucleus	77.41	66.35
TraesCS4B01G059000.1	Wheat	nucleus	78.52	65.63
TraesCS4A01G255800.3	Wheat	nucleus	78.15	64.92
HORVU4Hr1G009970.28	Barley	nucleus	76.67	64.09
Zm00001d033870_P001	Maize	nucleus	76.3	63.78
Zm00001d013357_P001	Maize	nucleus	65.56	50.86
GSMUA_Achr1P27010_001	Banana	nucleus	35.93	42.92
Os07t0193800-01	Rice	endoplasmic reticulum	27.41	35.58
Os04t0350700-01	Rice	nucleus	34.44	35.36
Os06t0613500-01	Rice	cytosol, nucleus	22.96	34.83
GSMUA_AchrUn_...	Banana	nucleus	36.3	34.63
CDY31048	Canola	nucleus	37.78	32.48
CDY20659	Canola	nucleus	38.15	30.93
Bra018461.1-P	Field mustard	nucleus	36.67	30.75
Bra031700.1-P	Field mustard	nucleus	36.3	29.97
Os03t0802900-01	Rice	nucleus	29.26	29.81
CDY22605	Canola	nucleus	38.89	29.75
AT1G10120.1	Thale cress	nucleus	39.26	28.96
CDY53834	Canola	nucleus	37.04	28.82
CDY63738	Canola	nucleus	36.3	28.66
Bra019962.1-P	Field mustard	nucleus	35.19	28.02
Solyc04g077480.2.1	Tomato	nucleus	38.52	27.23
PGSC0003DMT400012591	Potato	nucleus	38.15	26.96
KRH61450	Soybean	nucleus	37.04	26.6
Os09t0510500-01	Rice	nucleus	27.78	26.6
KRH52141	Soybean	nucleus	29.26	26.42
Os09t0501600-01	Rice	nucleus	34.07	25.14
VIT_18s0001g08600.t01	Wine grape	nucleus	38.89	24.42
CDY57925	Canola	nucleus	35.93	24.37
Os08t0536800-01	Rice	cytosol, nucleus, plastid	27.78	24.27
KRH15460	Soybean	nucleus	38.15	24.01
KRG88634	Soybean	nucleus, plastid	38.52	23.91
Os01t0915600-01	Rice	nucleus	41.85	23.49
Os09t0474100-01	Rice	nucleus	36.67	23.13
Os02t0705500-01	Rice	nucleus	30.74	22.99
Os06t0275600-01	Rice	cytosol, nucleus	37.04	22.88
Os08t0524800-01	Rice	nucleus	34.07	22.72
Os11t0442500-00	Rice	nucleus	30.37	21.87
Os05t0103000-01	Rice	nucleus	27.04	21.53
Os08t0487700-00	Rice	nucleus	26.67	20.99
Os09t0474051-01	Rice	plastid	12.96	5.98

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	UniProt:A0A0P0W2I2	ProteinID:BAS86197.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009628	GO:GO:0009637	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os03g0728900	EnsemblPlants:Os03t0728900-00	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF182	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0003938926
InterPro:bHLH_dom	:	:	:	:	:

Description

basic helix-loop-helix protein 084Helix-loop-helix DNA-binding domain containing protein. (Os03t0728900-00)

Coordinates

chr3:-:29774858..29778471

Molecular Weight (calculated)

29841.3 Da

IEP (calculated)

6.164

GRAVY (calculated)

-0.586

Length

270 amino acids

Sequence
(BLAST)

001: SLTGTFCQNI QLSDDHSSGA KRRKGIDDHI ALLNPSASSR IQNVGDQQTE VSSQQERISM EEDNQKSCSK MQSKEDSSDG DGTKEDYVHV RAKRGQATNS
101: HSLAERLRRK KISERMKLLQ DLVPGCSKIT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPELSFDIEQ ILSKQMMLSQ DRHLAFYGVD PGSSALVAHF
201: NQGIMQPEML CNVSNPADVL QGTTIQDIST VNQIPAMWEG LQNIPHLNYN PGGAMAEGST NNSGSMKIEK

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.