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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G257000.2 Wheat nucleus 77.53 81.14
TraesCS7B01G152800.1 Wheat nucleus 76.05 80.0
EES15330 Sorghum nucleus 76.05 77.58
Zm00001d031561_P002 Maize nucleus 72.84 75.45
TraesCS7A01G256200.3 Wheat nucleus 70.62 72.04
HORVU7Hr1G052870.23 Barley nucleus 69.88 72.01
Os09t0501600-01 Rice nucleus 56.3 62.3
Os07t0193800-01 Rice endoplasmic reticulum 20.74 40.38
Os06t0613500-01 Rice cytosol, nucleus 16.3 37.08
Os04t0350700-01 Rice nucleus 23.7 36.5
Os03t0802900-01 Rice nucleus 23.21 35.47
Os03t0728900-00 Rice cytosol, nucleus 22.72 34.07
Os09t0510500-01 Rice nucleus 21.73 31.21
Os08t0536800-01 Rice cytosol, nucleus, plastid 22.72 29.77
Os02t0705500-01 Rice nucleus 25.43 28.53
Os09t0474100-01 Rice nucleus 30.12 28.5
Solyc09g057710.2.1 Tomato nucleus 33.09 28.27
Os06t0275600-01 Rice cytosol, nucleus 29.63 27.46
PGSC0003DMT400053639 Potato nucleus 32.84 27.03
Os11t0442500-00 Rice nucleus 24.69 26.67
Os01t0915600-01 Rice nucleus 31.6 26.61
Os05t0103000-01 Rice nucleus 20.49 24.48
GSMUA_Achr10P... Banana nucleus 24.69 23.64
GSMUA_Achr7P22770_001 Banana nucleus 24.94 22.85
Os08t0487700-00 Rice nucleus 19.01 22.45
GSMUA_Achr4P16120_001 Banana nucleus 24.2 21.44
GSMUA_Achr7P02770_001 Banana nucleus 24.94 20.7
Os09t0474051-01 Rice plastid 13.33 9.23
Protein Annotations
MapMan:15.5.32MapMan:26.1.2.1.2Gene3D:4.10.280.10EntrezGene:4346087ProteinID:BAC75416.1ProteinID:BAF24203.1
ProteinID:BAT06330.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638
EnsemblPlantsGene:Os08g0524800EnsemblPlants:Os08t0524800-01PFAM:PF00010PFscan:PS50888PANTHER:PTHR12565PANTHER:PTHR12565:SF169
UniProt:Q84QW1SMART:SM00353SUPFAM:SSF47459UniParc:UPI0000185CA1RefSeq:XP_015648582.1InterPro:bHLH_dom
SEG:seg:::::
Description
basic helix-loop-helix protein 091Similar to TA1 protein (Fragment). (Os08t0524800-01)
Coordinates
chr8:+:26102849..26105352
Molecular Weight (calculated)
42386.4 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.559
Length
405 amino acids
Sequence
(BLAST)
001: MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA IVAPGGGGGG GDCGLDKLCG DPGFAERAAR LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE
101: ASSVSDPASS AMKDAAANAK KRKSTAAAAA AAKGKGKEPP VGEEKESDGK RCKTGNGEKE SSVKPKAEQA GSDSSVEDGG GGGQKQGKGK NAKPVEPPKD
201: YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC NKVIGKALML DEIINYVQSL QRQVEFLSMK LATVNPLDFS NLPTLLQKDM FQACGPSASS
301: VFSLESSNSA FRFAEQGDVF QQFAQNSMES QCTLNQLDLA LSQATNAAQY AFQDGTAGAN LQQRNFWEDD LQSVFHIENG QSQENGVSAP NFHGQQQAGH
401: MKMEF
Best Arabidopsis Sequence Match ( AT5G48560.1 )
(BLAST)
001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
Arabidopsis Description
BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.