Factsheet for Os01t0915600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04098	Sorghum	nucleus	86.07	85.54
Zm00001d042373_P002	Maize	nucleus	81.08	84.23
Zm00001d012067_P003	Maize	nucleus	80.04	80.21
TraesCS3B01G457400.1	Wheat	nucleus	77.34	78.48
TraesCS3D01G417300.2	Wheat	nucleus	76.51	76.83
TraesCS3A01G421400.1	Wheat	nucleus	69.02	75.97
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	76.51	57.86
Os04t0350700-01	Rice	nucleus	24.32	44.49
Os07t0193800-01	Rice	endoplasmic reticulum	18.3	42.31
Os03t0728900-00	Rice	cytosol, nucleus	23.49	41.85
Os06t0613500-01	Rice	cytosol, nucleus	14.55	39.33
Os03t0802900-01	Rice	nucleus	21.21	38.49
Os11t0442500-00	Rice	nucleus	29.31	37.6
PGSC0003DMT400053639	Potato	nucleus	37.01	36.18
Solyc09g057710.2.1	Tomato	nucleus	35.34	35.87
Os09t0501600-01	Rice	nucleus	25.99	34.15
Os08t0524800-01	Rice	nucleus	26.61	31.6
GSMUA_Achr10P...	Banana	nucleus	26.2	29.79
Os09t0474100-01	Rice	nucleus	26.4	29.67
Os02t0705500-01	Rice	nucleus	22.25	29.64
Os09t0510500-01	Rice	nucleus	16.84	28.72
Os08t0536800-01	Rice	cytosol, nucleus, plastid	18.09	28.16
GSMUA_Achr7P22770_001	Banana	nucleus	25.78	28.05
Os06t0275600-01	Rice	cytosol, nucleus	24.53	27.0
GSMUA_Achr4P16120_001	Banana	nucleus	24.12	25.38
Os08t0487700-00	Rice	nucleus	17.26	24.2
Os05t0103000-01	Rice	nucleus	17.05	24.19
GSMUA_Achr7P02770_001	Banana	nucleus	24.53	24.18
Os09t0474051-01	Rice	plastid	11.43	9.4

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:4324327	EMBL:AK101063	ProteinID:BAD82399.1
ProteinID:BAF07102.1	ProteinID:BAS75875.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EMBL:HQ858864
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os01g0915600	EnsemblPlants:Os01t0915600-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF169	UniProt:Q5N802	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000049EA37
RefSeq:XP_015621927.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

basic helix-loop-helix protein 090Similar to TA1 protein (Fragment). (Os01t0915600-01)

Coordinates

chr1:-:39894690..39897520

Molecular Weight (calculated)

50047.7 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.594

Length

481 amino acids

Sequence
(BLAST)

001: MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QVGGGGGGGG
101: GLPILENLMP MGHLDQFLAD PGFAERAARL SGFDARGGGG GGGYGGAGPA QFGLPDAGAA GASKEMELGN TRDESSVSDP APGGAEIPPK GASDGNARKR
201: KASGKGKGKD SPMSTSAAKE DSSGKRCKST EESNAAAEEN SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS
301: QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL AKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG
401: LTNGMDNQGS MHPLDPAFCR PMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG SLQTVHMKME L

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.