Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042373_P002 | Maize | nucleus | 87.6 | 91.58 |
| Zm00001d012067_P003 | Maize | nucleus | 86.98 | 87.71 |
| Os01t0915600-01 | Rice | nucleus | 85.54 | 86.07 |
| TraesCS3B01G457400.1 | Wheat | nucleus | 75.62 | 77.22 |
| TraesCS3D01G417300.2 | Wheat | nucleus | 75.62 | 76.41 |
| TraesCS3A01G421400.1 | Wheat | nucleus | 68.39 | 75.74 |
| HORVU3Hr1G093310.2 | Barley | nucleus, plasma membrane, plastid | 74.79 | 56.92 |
| OQU91059 | Sorghum | nucleus | 23.14 | 35.56 |
| OQU89735 | Sorghum | nucleus | 25.62 | 35.23 |
| Solyc09g057710.2.1 | Tomato | nucleus | 34.3 | 35.02 |
| PGSC0003DMT400053639 | Potato | nucleus | 35.33 | 34.76 |
| EER90712 | Sorghum | nucleus | 17.77 | 33.99 |
| OQU83382 | Sorghum | nucleus | 30.17 | 33.95 |
| EES15330 | Sorghum | nucleus | 27.27 | 33.25 |
| EER99171 | Sorghum | nucleus | 18.18 | 31.32 |
| KXG35834 | Sorghum | nucleus | 27.69 | 30.66 |
| GSMUA_Achr10P... | Banana | nucleus | 26.45 | 30.26 |
| OQU81018 | Sorghum | nucleus | 22.93 | 29.6 |
| EES14175 | Sorghum | nucleus | 17.56 | 29.01 |
| EES05656 | Sorghum | nucleus | 21.49 | 28.97 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 25.62 | 28.05 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 23.14 | 24.51 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 23.97 | 23.77 |
| OQU76702 | Sorghum | nucleus | 20.04 | 23.66 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:8056168 | UniProt:C5XG71 | EnsemblPlants:EES04098 |
| ProteinID:EES04098 | ProteinID:EES04098.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF169 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3003G400600 | SUPFAM:SSF47459 | unigene:Sbi.3272 | UniParc:UPI0001A85543 |
| RefSeq:XP_002458978.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:70917771..70920910
Molecular Weight (calculated)
50968.8 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.569
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCGPPDQLP PASAPACFLN LNWDQSMAAA TAGDHLDPAL SSMVSSPASN STAAAATDGL ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPPPQVGG
101: AAPSGLPILE NLMPMAHLDQ FLADPGFAER AARLSGFDGR PGGSGYGGAV PGQFGLPDAD PIDALKELEL GNGRDESSVS DPASASAEMA LKGPSDGNAK
201: KRKASGKGKG KDGPGSTAAK DLAKEESGGK RCKSADESNG AEDNSTKGKA AQSNSENGGK KQGKDSTSKP PEPPKDYIHV RARRGEATDS HSLAERVRRE
301: KISQRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP NLLPKDIHQS CGPLQNSHFP LETSGAPLPY LNQPHQGNPL
401: GCSLTGMDSQ SSMHPLDPAF CRPMNSQHPF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQS QEIAPTSSNS YNGSLQTVHM KMEL
101: AAPSGLPILE NLMPMAHLDQ FLADPGFAER AARLSGFDGR PGGSGYGGAV PGQFGLPDAD PIDALKELEL GNGRDESSVS DPASASAEMA LKGPSDGNAK
201: KRKASGKGKG KDGPGSTAAK DLAKEESGGK RCKSADESNG AEDNSTKGKA AQSNSENGGK KQGKDSTSKP PEPPKDYIHV RARRGEATDS HSLAERVRRE
301: KISQRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP NLLPKDIHQS CGPLQNSHFP LETSGAPLPY LNQPHQGNPL
401: GCSLTGMDSQ SSMHPLDPAF CRPMNSQHPF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQS QEIAPTSSNS YNGSLQTVHM KMEL
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.