Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER88355 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | EER88355 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051569_P001 | Maize | nucleus | 83.01 | 87.13 |
| Zm00001d017778_P001 | Maize | nucleus | 89.42 | 83.59 |
| Os02t0705500-01 | Rice | nucleus | 68.8 | 68.42 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 63.51 | 64.96 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 62.95 | 63.84 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 64.07 | 63.71 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 64.07 | 59.59 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 33.43 | 37.97 |
| CDX76288 | Canola | nucleus | 24.51 | 35.2 |
| EER90712 | Sorghum | nucleus | 23.96 | 33.99 |
| GSMUA_Achr10P... | Banana | nucleus | 37.6 | 33.58 |
| Bra034636.1-P | Field mustard | nucleus | 25.91 | 33.1 |
| EER99171 | Sorghum | nucleus | 25.35 | 32.38 |
| CDY17466 | Canola | nucleus | 25.07 | 32.37 |
| Solyc03g034000.2.1 | Tomato | nucleus | 23.96 | 32.33 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 27.3 | 32.13 |
| EES14175 | Sorghum | nucleus | 25.91 | 31.74 |
| PGSC0003DMT400058169 | Potato | nucleus | 23.68 | 31.72 |
| PGSC0003DMT400040021 | Potato | nucleus | 26.74 | 31.68 |
| CDX75440 | Canola | nucleus | 28.69 | 31.31 |
| Bra011540.1-P | Field mustard | nucleus | 28.41 | 31.1 |
| AT4G34530.1 | Thale cress | nucleus | 28.69 | 30.75 |
| OQU91059 | Sorghum | nucleus | 26.46 | 30.16 |
| CDX69067 | Canola | nucleus | 27.86 | 29.41 |
| KRH51523 | Soybean | nucleus | 30.36 | 27.95 |
| KRH29448 | Soybean | nucleus | 30.92 | 26.37 |
| KRH24463 | Soybean | nucleus | 29.53 | 26.24 |
| KRH60839 | Soybean | nucleus | 30.64 | 25.58 |
| OQU89735 | Sorghum | nucleus | 25.07 | 25.57 |
| EES15330 | Sorghum | nucleus | 27.86 | 25.19 |
| Solyc01g109700.2.1 | Tomato | nucleus | 30.36 | 25.12 |
| PGSC0003DMT400001888 | Potato | nucleus | 30.36 | 24.66 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 30.92 | 24.5 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 24.51 | 24.04 |
| OQU81018 | Sorghum | nucleus | 23.68 | 22.67 |
| KXG35834 | Sorghum | nucleus | 27.58 | 22.65 |
| OQU83382 | Sorghum | nucleus | 27.02 | 22.56 |
| EES04098 | Sorghum | nucleus | 28.97 | 21.49 |
| OQU76702 | Sorghum | nucleus | 22.01 | 19.27 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:8073858 | UniProt:C5Y0B6 | EnsemblPlants:EES05656 |
| ProteinID:EES05656 | ProteinID:EES05656.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF182 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3004G267400 | SUPFAM:SSF47459 | unigene:Sbi.11612 | UniParc:UPI0001A85D87 |
| RefSeq:XP_002452680.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:61174564..61177405
Molecular Weight (calculated)
37277.3 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.149
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MARCQGTVES LCQGLLDLDD DRFSAMCSAF GYLQEWPDLG AMCGANLAVP AVAAAAAPSA GDGNDSSSCS GSGGIRKRRP DAYLDAKGGA NDMSKRPRGK
101: QLTGLSEIAA PGKGKQERPK AGTKKKAEAA STAAAAAAAA AAAAGQKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD
201: EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQAAALPAMA LPAGQLEPSC LQMSPMQQVH PSAAAGGSTG FGLEMVVNNL YAPAAASCPV
301: SAAPSVSAAA GPSTIEPCLN VNGTAAAWDI GAQNLFSGFD AQFQSVESDC LLDNLKMEM
101: QLTGLSEIAA PGKGKQERPK AGTKKKAEAA STAAAAAAAA AAAAGQKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD
201: EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQAAALPAMA LPAGQLEPSC LQMSPMQQVH PSAAAGGSTG FGLEMVVNNL YAPAAASCPV
301: SAAPSVSAAA GPSTIEPCLN VNGTAAAWDI GAQNLFSGFD AQFQSVESDC LLDNLKMEM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.