Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g034000.2.1 | Tomato | nucleus | 32.79 | 45.11 |
| PGSC0003DMT400058169 | Potato | nucleus | 32.79 | 44.78 |
| PGSC0003DMT400040021 | Potato | nucleus | 36.07 | 43.56 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 35.79 | 42.95 |
| VIT_01s0244g00010.t01 | Wine grape | nucleus | 25.41 | 34.44 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 42.08 | 34.0 |
| VIT_01s0026g01140.t01 | Wine grape | nucleus | 23.5 | 31.05 |
| VIT_17s0000g05370.t01 | Wine grape | nucleus | 23.77 | 30.63 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 25.68 | 29.75 |
| VIT_17s0000g00430.t01 | Wine grape | nucleus | 25.68 | 26.93 |
| VIT_07s0151g00450.t01 | Wine grape | nucleus | 29.51 | 26.02 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 24.86 | 25.93 |
| Zm00001d051569_P001 | Maize | nucleus | 23.77 | 25.44 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 24.59 | 25.42 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 25.14 | 25.27 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 24.86 | 25.21 |
| Os02t0705500-01 | Rice | nucleus | 24.32 | 24.65 |
| EES05656 | Sorghum | nucleus | 24.04 | 24.51 |
| GSMUA_Achr10P... | Banana | nucleus | 26.5 | 24.13 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 24.86 | 23.58 |
| Zm00001d017778_P001 | Maize | nucleus | 24.32 | 23.18 |
| VIT_18s0001g08600.t01 | Wine grape | nucleus | 27.05 | 23.02 |
| VIT_01s0010g00740.t01 | Wine grape | nucleus | 27.6 | 21.54 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 29.51 | 19.85 |
Protein Annotations
| EntrezGene:100240994 | wikigene:100240994 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ProteinID:CBI17503 |
| ProteinID:CBI17503.3 | ncoils:Coil | UniProt:D7SPC4 | EMBL:FN594959 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100240994 |
| wikigene:LOC100240994 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0001BE0DCF | ArrayExpress:VIT_04s0023g01930 | EnsemblPlantsGene:VIT_04s0023g01930 | EnsemblPlants:VIT_04s0023g01930.t01 | RefSeq:XP_002266502 |
| RefSeq:XP_002266502.1 | RefSeq:XP_002266502.2 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:18512510..18514368
Molecular Weight (calculated)
40645.8 Da
IEP (calculated)
5.862
GRAVY (calculated)
-0.600
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHCLRSPED FAAIGRPETM KWLHQPQKFQ QPSFHSKSFG FSQSSQIDDL NSVLREIPNR SMKAENSWDN GLPGLGDFPT AGTDFRGHGM GFELPEIAGS
101: SLEMDHSISR TSSCPLPDLG AATSVDGREL AGRNSVKKRK AEVALTEECK DQKIKRDEEE EESKIEEKHS EISPNASKVS GSPKPDYIHV RARRGQATDS
201: HSLAERARRE KISKKMKYLQ DLVPGCNKIT GKAGMLDEII NYVQSLQRQV EFLSLKLATM NPRTDFNLDT FLGKEFPAYV AAGFPTAAAS SEMANLPFLQ
301: FQPVPQGITS CELHMPIDPP QSALQMTTSS STSVPEMFTN STSFSQVQPF TTWDTDLQSL YTGEFQ
101: SLEMDHSISR TSSCPLPDLG AATSVDGREL AGRNSVKKRK AEVALTEECK DQKIKRDEEE EESKIEEKHS EISPNASKVS GSPKPDYIHV RARRGQATDS
201: HSLAERARRE KISKKMKYLQ DLVPGCNKIT GKAGMLDEII NYVQSLQRQV EFLSLKLATM NPRTDFNLDT FLGKEFPAYV AAGFPTAAAS SEMANLPFLQ
301: FQPVPQGITS CELHMPIDPP QSALQMTTSS STSVPEMFTN STSFSQVQPF TTWDTDLQSL YTGEFQ
001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.