Factsheet for Solyc03g034000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058169	Potato	nucleus	93.98	93.28
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	53.76	46.89
Solyc03g113560.2.1	Tomato	cytosol	16.17	42.16
Solyc04g005130.2.1	Tomato	nucleus	30.08	35.24
VIT_04s0023g01930.t01	Wine grape	nucleus	45.11	32.79
Solyc05g006650.2.1	Tomato	nucleus	29.7	29.04
Solyc06g072520.1.1	Tomato	nucleus, plastid	28.57	26.3
GSMUA_Achr6P09050_001	Banana	nucleus	31.2	26.27
Zm00001d051569_P001	Maize	nucleus	33.08	25.73
TraesCS6D01G253000.1	Wheat	nucleus	33.08	24.86
TraesCS6B01G300400.1	Wheat	nucleus	32.71	24.79
TraesCS6A01G273000.2	Wheat	nucleus	33.08	24.38
Os02t0705500-01	Rice	nucleus	32.71	24.1
EES05656	Sorghum	nucleus	32.33	23.96
Solyc01g109700.2.1	Tomato	nucleus	38.35	23.5
Solyc03g097820.1.1	Tomato	nucleus	28.57	23.03
Zm00001d017778_P001	Maize	nucleus	32.71	22.66
HORVU6Hr1G068980.2	Barley	nucleus	32.33	22.28
Solyc10g079070.1.1	Tomato	nucleus	29.7	21.88
GSMUA_Achr10P...	Banana	nucleus	32.33	21.39
Solyc09g097870.2.1	Tomato	nucleus	34.59	21.35
Solyc04g077480.2.1	Tomato	nucleus	29.7	20.68
Solyc12g098620.1.1	Tomato	nucleus	31.2	20.54
Solyc06g083170.2.1	Tomato	nucleus	33.83	19.4
Solyc09g057710.2.1	Tomato	nucleus	34.21	19.2
Solyc05g010610.2.1	Tomato	nucleus	36.09	18.57
Solyc01g010130.2.1	Tomato	nucleus	34.59	17.13
Solyc04g005220.1.1	Tomato	nucleus	25.19	15.99

Protein Annotations

EnsemblPlants:Solyc03g034000.2.1	EnsemblPlantsGene:Solyc03g034000.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002767BB7	UniProt:K4BFS2	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

No Description!

Coordinates

chr3:-:5700161..5702876

Molecular Weight (calculated)

30577.5 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.677

Length

266 amino acids

Sequence
(BLAST)

001: MSILERQRAI FEHLYQCQQQ QQTSNSLPNQ NLAQLNSLMS ENTMEFSQFQ NFPFKIDTQI DFGSEKRNWT SKKRKSEVYE EYECKVERLD GEAGEVKTEM
101: IVKTEKGKNS KENLEAKNTD FIHVRARRGQ ATDSHSLAER ARREKISKKM KCLQDLVPGC NKVIGKAGML DEIINYVQSL QKQVEFLSIK LATSNVNTDN
201: LFAKELPNPT FLQQQGNINI GVTQRRENCL MSFPEAVLDS SNVLALQQLP NLETDLQCLF GVRFQK

Best Arabidopsis Sequence Match ( AT4G36540.1 )
(BLAST)

001: MDLSVLDRLK WLQQQQMVSP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGPD YDTTDGCISR TSSFHMEPVK NNGHSRAITL QNKRKPEGKT
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQFQAY FTGPPEGDSK QSIMADFRSF PLHQQGSLDY SVINSDHTTS LGAKDHTSSS WETHSQCLYN SLRTDSVSNF
301: FSLK

Arabidopsis Description

BEE2Transcription factor BEE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VJ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.