Factsheet for Solyc06g083170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	93.32	92.72
Solyc03g113560.2.1	Tomato	cytosol	9.48	43.14
Solyc04g005130.2.1	Tomato	nucleus	19.18	39.21
Solyc09g057710.2.1	Tomato	nucleus	38.58	37.76
Solyc09g097870.2.1	Tomato	nucleus	34.48	37.12
Solyc05g006650.2.1	Tomato	nucleus	21.12	36.03
Solyc12g098620.1.1	Tomato	nucleus	30.17	34.65
Solyc03g034000.2.1	Tomato	nucleus	19.4	33.83
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	22.2	33.77
Solyc06g072520.1.1	Tomato	nucleus, plastid	20.26	32.53
Solyc03g097820.1.1	Tomato	nucleus	21.34	30.0
Solyc10g079070.1.1	Tomato	nucleus	23.06	29.64
Solyc04g077480.2.1	Tomato	nucleus	22.41	27.23
Solyc01g109700.2.1	Tomato	nucleus	23.28	24.88
Solyc05g010610.2.1	Tomato	nucleus	27.59	24.76
Solyc01g010130.2.1	Tomato	nucleus	28.45	24.58
Solyc04g005220.1.1	Tomato	nucleus	18.75	20.76

Protein Annotations

EnsemblPlants:Solyc06g083170.2.1	EnsemblPlantsGene:Solyc06g083170.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002765BEE	UniProt:K4CAH2	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

No Description!

Coordinates

chr6:+:48705035..48707756

Molecular Weight (calculated)

51163.2 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.651

Length

464 amino acids

Sequence
(BLAST)

001: MDNDCFSNGG IQPPFHFDPK IPLNSLHSPH SDYFLNTHWD NNSTDNQYTH FDSALSSIVS SPVPSNSVNS NSSLCELIGK LGSICTSPST PFTSNCDSTR
101: TSCYTTPMSS PPKLHIPIMN QIGKDKVPNL GNSVVMNSPP FPSLSAAKFS CFGSRSFNGR TSQFELNNED SRYGSGTGVM GIGNLTRISS SPCVVQNKNS
201: SLMMCERLNL GKISGRNEEC SVSEQDPNGE MGSKTRNVLN SKKRKAVKSK DFVPIVDETG KKRAKSTQGN GSNNGTVKME EQKGNEDDGA EKETKENRKI
301: AEPPKDYIHV RARRGQATDS HSLAERVRRE KISQRMKLLQ DLVPGCNKVT GKALMLDEII NYVRSLQHQV EFLSMKLASV NPRTDIHIDS LLHTEISQPS
401: GSLHQHVFPV DGYAENLAQL PTICEDDLQS IVQMGFNQNS NQDLILQSQT FPVPNSESQM KIKM

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.