Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011651 | Potato | nucleus | 92.57 | 90.56 |
| Solyc03g113560.2.1 | Tomato | cytosol | 11.39 | 45.1 |
| CDY72360 | Canola | cytosol | 16.34 | 44.0 |
| Solyc09g097870.2.1 | Tomato | nucleus | 44.55 | 41.76 |
| CDY18099 | Canola | nucleus | 21.29 | 38.56 |
| CDY25986 | Canola | plastid | 20.54 | 38.07 |
| Solyc04g005130.2.1 | Tomato | nucleus | 21.29 | 37.89 |
| Bra037059.1-P | Field mustard | nucleus | 26.73 | 37.76 |
| CDY08308 | Canola | nucleus | 27.23 | 37.67 |
| CDY64034 | Canola | nucleus | 28.22 | 37.13 |
| Bra028335.1-P | Field mustard | nucleus | 30.2 | 36.75 |
| CDY56230 | Canola | nucleus | 29.46 | 35.74 |
| CDY33821 | Canola | mitochondrion, plastid | 17.33 | 35.71 |
| CDX85122 | Canola | nucleus | 28.71 | 35.05 |
| CDX77488 | Canola | nucleus | 28.22 | 34.65 |
| Bra014972.1-P | Field mustard | nucleus | 27.97 | 34.35 |
| AT3G23690.1 | Thale cress | nucleus | 30.45 | 33.15 |
| Solyc05g006650.2.1 | Tomato | nucleus | 21.78 | 32.35 |
| Solyc03g034000.2.1 | Tomato | nucleus | 20.54 | 31.2 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 23.27 | 30.82 |
| CDY61581 | Canola | plastid | 13.86 | 30.6 |
| Solyc06g083170.2.1 | Tomato | nucleus | 34.65 | 30.17 |
| Solyc09g057710.2.1 | Tomato | nucleus | 35.15 | 29.96 |
| Solyc06g072520.1.1 | Tomato | nucleus, plastid | 20.79 | 29.07 |
| Solyc03g097820.1.1 | Tomato | nucleus | 22.77 | 27.88 |
| Solyc10g079070.1.1 | Tomato | nucleus | 24.26 | 27.15 |
| Solyc04g077480.2.1 | Tomato | nucleus | 25.0 | 26.44 |
| Solyc01g109700.2.1 | Tomato | nucleus | 26.24 | 24.42 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 32.67 | 24.26 |
| Solyc05g010610.2.1 | Tomato | nucleus | 30.94 | 24.18 |
| Solyc01g010130.2.1 | Tomato | nucleus | 31.19 | 23.46 |
| Solyc04g005220.1.1 | Tomato | nucleus | 22.03 | 21.24 |
Protein Annotations
| EnsemblPlants:Solyc12g098620.1.1 | EnsemblPlantsGene:Solyc12g098620.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000276A207 | UniProt:K4DHN5 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : |
Description
No Description!
Coordinates
chr12:+:66065713..66068316
Molecular Weight (calculated)
45622.8 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.868
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKNLFLNN VNTMNELNCT STSFYNPNWE NSSMDYQNDN ILSSNSNNFG EISPNSFVGS NNNSCYTTPL NSPPRLNLSN FDHQIKGNFP NTSNNLPHFS
101: TNLGNFSCFG GNDSQFVQNL ESCKLSRNKS MKESEFGDSR ENSSISQQIQ LEEVGIKCQN DANSKKGKSI PKRKAKEITP KNDNVSTQNN ESSSKRVKSD
201: EKNEENQKPQ DSLKDYIHVR ARRGQATDAH SLAERVRREK IGERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQCQVE FLSMKLSNLN STTDFNAESL
301: TSKNMFQSVG SLHHNMNSSE SSVQEFPYGF QSQQGSNIQS FLTKETEFPF KINPHLDGFV EQTPQVPTFF EDHDLHSFIH MGFSQIQAQN YPGNVSTAQM
401: KAEL
101: TNLGNFSCFG GNDSQFVQNL ESCKLSRNKS MKESEFGDSR ENSSISQQIQ LEEVGIKCQN DANSKKGKSI PKRKAKEITP KNDNVSTQNN ESSSKRVKSD
201: EKNEENQKPQ DSLKDYIHVR ARRGQATDAH SLAERVRREK IGERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQCQVE FLSMKLSNLN STTDFNAESL
301: TSKNMFQSVG SLHHNMNSSE SSVQEFPYGF QSQQGSNIQS FLTKETEFPF KINPHLDGFV EQTPQVPTFF EDHDLHSFIH MGFSQIQAQN YPGNVSTAQM
401: KAEL
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.