Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g090100.2.1 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | Solyc09g090100.2.1 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001888 | Potato | nucleus | 93.09 | 91.4 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 51.61 | 49.45 |
| Solyc03g113560.2.1 | Tomato | cytosol | 11.06 | 47.06 |
| KRH51523 | Soybean | nucleus | 41.24 | 45.9 |
| KRH24463 | Soybean | nucleus | 40.09 | 43.07 |
| KRH29448 | Soybean | nucleus | 41.71 | 42.99 |
| KRH60839 | Soybean | nucleus | 41.94 | 42.33 |
| Solyc04g005130.2.1 | Tomato | nucleus | 20.97 | 40.09 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 28.11 | 40.0 |
| Solyc03g034000.2.1 | Tomato | nucleus | 23.5 | 38.35 |
| CDX76288 | Canola | nucleus | 20.97 | 36.4 |
| CDY17466 | Canola | nucleus | 22.35 | 34.89 |
| Bra034636.1-P | Field mustard | nucleus | 22.58 | 34.88 |
| Solyc05g006650.2.1 | Tomato | nucleus | 21.2 | 33.82 |
| AT4G34530.1 | Thale cress | nucleus | 25.81 | 33.43 |
| Bra011540.1-P | Field mustard | nucleus | 25.12 | 33.23 |
| CDX75440 | Canola | nucleus | 24.88 | 32.83 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 23.73 | 32.59 |
| CDX69067 | Canola | nucleus | 24.88 | 31.76 |
| Solyc06g072520.1.1 | Tomato | nucleus, plastid | 20.74 | 31.14 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 24.88 | 30.51 |
| EES05656 | Sorghum | nucleus | 25.12 | 30.36 |
| Os02t0705500-01 | Rice | nucleus | 24.88 | 29.92 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 24.19 | 29.91 |
| Zm00001d051569_P001 | Maize | nucleus | 23.5 | 29.82 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 24.65 | 29.64 |
| Zm00001d017778_P001 | Maize | nucleus | 25.35 | 28.65 |
| Solyc03g097820.1.1 | Tomato | nucleus | 21.66 | 28.48 |
| GSMUA_Achr10P... | Banana | nucleus | 26.04 | 28.11 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 24.88 | 27.98 |
| Solyc10g079070.1.1 | Tomato | nucleus | 23.27 | 27.98 |
| Solyc04g077480.2.1 | Tomato | nucleus | 24.42 | 27.75 |
| Solyc09g097870.2.1 | Tomato | nucleus | 26.73 | 26.91 |
| Solyc12g098620.1.1 | Tomato | nucleus | 24.42 | 26.24 |
| Solyc09g057710.2.1 | Tomato | nucleus | 28.11 | 25.74 |
| Solyc06g083170.2.1 | Tomato | nucleus | 24.88 | 23.28 |
| Solyc05g010610.2.1 | Tomato | nucleus | 27.65 | 23.21 |
| Solyc01g010130.2.1 | Tomato | nucleus | 27.88 | 22.53 |
| Solyc04g005220.1.1 | Tomato | nucleus | 18.89 | 19.57 |
Protein Annotations
| EnsemblPlants:Solyc01g109700.2.1 | EnsemblPlantsGene:Solyc01g109700.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002768B9D | UniProt:K4B3I3 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
No Description!
Coordinates
chr1:+:96594953..96598114
Molecular Weight (calculated)
48629.2 Da
IEP (calculated)
6.363
GRAVY (calculated)
-0.715
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIALPEMLH NITSNGSSEL SVLDRTKWQV QQQEMSYFNG QNDQLMNSFH QTAEAQQFHG LINVNDQSLN ELVTRAIKPD PCMENSWGGF GTTGTNGFDY
101: VPVGVGHGGM SHPSEMNYAI SRTTSCPPTM ADNVVKPKDT RLSSNRGRES FKKRKADKNQ HLKEVAEEET KDKKLKECIE EEDDSSKVTT EKKSNKRSAT
201: NSSNSKENSD TSKEKSKITD DKKLDYIHVR ARRGQATDSH SLAERVRREK ISERMRFLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLAAVN
301: PRLDIDADNF FNKDIFATST STFSAVGAGT SSEMLSMAQR QFNSLQQIMS SSGLEMGIVN LNEMALRRTT SAPVPIPEMF LDSSSINQVQ SFQTWNTDLD
401: NMYAMELQQG RSAQFLPHPC TGFAEAGHDL KMEM
101: VPVGVGHGGM SHPSEMNYAI SRTTSCPPTM ADNVVKPKDT RLSSNRGRES FKKRKADKNQ HLKEVAEEET KDKKLKECIE EEDDSSKVTT EKKSNKRSAT
201: NSSNSKENSD TSKEKSKITD DKKLDYIHVR ARRGQATDSH SLAERVRREK ISERMRFLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLAAVN
301: PRLDIDADNF FNKDIFATST STFSAVGAGT SSEMLSMAQR QFNSLQQIMS SSGLEMGIVN LNEMALRRTT SAPVPIPEMF LDSSSINQVQ SFQTWNTDLD
401: NMYAMELQQG RSAQFLPHPC TGFAEAGHDL KMEM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.