Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra015313.1-P | nucleus |
| Bra030568.1-P | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | Bra015313.1-P | AT1G04400.1 | 22739826 |
| AT4G34530.1 | Bra030568.1-P | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75440 | Canola | nucleus | 98.17 | 97.87 |
| Bra034636.1-P | Field mustard | nucleus | 60.37 | 70.46 |
| AT4G34530.1 | Thale cress | nucleus | 70.73 | 69.25 |
| Bra037059.1-P | Field mustard | nucleus | 28.05 | 32.17 |
| Bra003300.1-P | Field mustard | nucleus | 31.1 | 31.68 |
| Bra019935.1-P | Field mustard | nucleus | 25.61 | 31.34 |
| Bra004679.1-P | Field mustard | nucleus | 28.35 | 30.79 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 29.27 | 30.38 |
| Bra022753.1-P | Field mustard | nucleus | 27.44 | 30.3 |
| KRH24463 | Soybean | nucleus | 36.89 | 29.95 |
| Bra028335.1-P | Field mustard | nucleus | 30.18 | 29.82 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 31.71 | 29.63 |
| KRH51523 | Soybean | nucleus | 35.06 | 29.49 |
| KRH29448 | Soybean | nucleus | 37.2 | 28.98 |
| Zm00001d051569_P001 | Maize | nucleus | 29.88 | 28.66 |
| Bra018461.1-P | Field mustard | nucleus | 28.05 | 28.57 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 31.4 | 28.53 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 30.79 | 28.53 |
| EES05656 | Sorghum | nucleus | 31.1 | 28.41 |
| Bra014972.1-P | Field mustard | nucleus | 28.35 | 28.27 |
| Bra007358.1-P | Field mustard | nucleus | 30.79 | 28.21 |
| Bra031700.1-P | Field mustard | nucleus | 28.05 | 28.13 |
| Bra014603.1-P | Field mustard | nucleus | 29.57 | 28.03 |
| Os02t0705500-01 | Rice | nucleus | 30.18 | 27.42 |
| Bra038336.1-P | Field mustard | plastid | 30.18 | 27.12 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 31.71 | 26.94 |
| Bra019962.1-P | Field mustard | nucleus | 27.74 | 26.84 |
| KRH60839 | Soybean | nucleus | 35.06 | 26.74 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 36.89 | 26.71 |
| Zm00001d017778_P001 | Maize | nucleus | 30.49 | 26.04 |
| PGSC0003DMT400001888 | Potato | nucleus | 34.45 | 25.57 |
| Solyc01g109700.2.1 | Tomato | nucleus | 33.23 | 25.12 |
| GSMUA_Achr10P... | Banana | nucleus | 29.57 | 24.13 |
| Bra020691.1-P | Field mustard | nucleus | 30.49 | 22.47 |
| Bra029640.1-P | Field mustard | nucleus, plastid | 30.18 | 22.3 |
| Bra004348.1-P | Field mustard | nucleus | 32.01 | 22.06 |
| Bra037478.1-P | Field mustard | nucleus | 31.4 | 21.02 |
Protein Annotations
| EnsemblPlants:Bra011540.1 | EnsemblPlants:Bra011540.1-P | EnsemblPlantsGene:Bra011540 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00025456FF | UniProt:M4D4Y3 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
AT4G34530 (E=3e-100) CIB1 | CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1); DNA binding / transcription factor
Coordinates
chrA01:-:1767348..1768780
Molecular Weight (calculated)
36812.8 Da
IEP (calculated)
5.666
GRAVY (calculated)
-0.568
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMNGEATE AELFLNCADM SVLERQRAQL NYHHLPGFFS NSSTINGGEI DDGFLASAGL DLPEIYGEVH GDARISVSPG NITNESGNSK KRKFGCVDTE
101: TKVFNEKKKM MMMDREVEVE EEEEKSKITE QSTKSIMKMK NKAKKEQNSC SNDSSKVTKD SQRTDYIHVR ARRGQATDSH SIAERARREK ISERMKFLQD
201: LVPGCEKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVS PRLDFNIDDI FAKEVVSAPM MNLPNSVMPP HMMVNSGYPH DMVNSGYVHF NPMQQVVTSS
301: DPLACFNNGQ SATMWDSDVQ NLYSSLGV
101: TKVFNEKKKM MMMDREVEVE EEEEKSKITE QSTKSIMKMK NKAKKEQNSC SNDSSKVTKD SQRTDYIHVR ARRGQATDSH SIAERARREK ISERMKFLQD
201: LVPGCEKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVS PRLDFNIDDI FAKEVVSAPM MNLPNSVMPP HMMVNSGYPH DMVNSGYVHF NPMQQVVTSS
301: DPLACFNNGQ SATMWDSDVQ NLYSSLGV
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.