Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Zm00001d045944_P007 | nucleus |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G34530.1 | Zm00001d045944_P007 | AT1G04400.1 | 22739826 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES05656 | Sorghum | nucleus | 83.59 | 89.42 |
Zm00001d051569_P001 | Maize | nucleus | 74.74 | 83.92 |
Os02t0705500-01 | Rice | nucleus | 62.5 | 66.48 |
TraesCS6B01G300400.1 | Wheat | nucleus | 59.64 | 65.24 |
TraesCS6D01G253000.1 | Wheat | nucleus | 59.64 | 64.69 |
TraesCS6A01G273000.2 | Wheat | nucleus | 59.9 | 63.71 |
HORVU6Hr1G068980.2 | Barley | nucleus | 62.76 | 62.44 |
GSMUA_Achr6P09050_001 | Banana | nucleus | 32.03 | 38.92 |
CDX76288 | Canola | nucleus | 23.18 | 35.6 |
GSMUA_Achr10P... | Banana | nucleus | 35.68 | 34.08 |
Zm00001d007768_P001 | Maize | nucleus | 21.88 | 33.47 |
Bra034636.1-P | Field mustard | nucleus | 24.48 | 33.45 |
Solyc03g034000.2.1 | Tomato | nucleus | 22.66 | 32.71 |
Zm00001d034503_P002 | Maize | nucleus | 21.61 | 32.55 |
CDY17466 | Canola | nucleus | 23.44 | 32.37 |
PGSC0003DMT400058169 | Potato | nucleus | 22.4 | 32.09 |
Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 25.26 | 31.8 |
PGSC0003DMT400040021 | Potato | nucleus | 24.74 | 31.35 |
CDX75440 | Canola | nucleus | 26.3 | 30.7 |
Bra011540.1-P | Field mustard | nucleus | 26.04 | 30.49 |
Zm00001d021086_P001 | Maize | nucleus, plastid | 22.66 | 30.31 |
AT4G34530.1 | Thale cress | nucleus | 26.3 | 30.15 |
Zm00001d031665_P001 | Maize | mitochondrion | 23.96 | 29.21 |
CDX69067 | Canola | nucleus | 25.52 | 28.82 |
Zm00001d033870_P001 | Maize | nucleus | 23.96 | 28.48 |
Zm00001d049870_P001 | Maize | nucleus | 23.44 | 28.21 |
KRH51523 | Soybean | nucleus | 28.65 | 28.21 |
Zm00001d006110_P002 | Maize | nucleus, plastid | 23.18 | 27.73 |
Zm00001d021019_P001 | Maize | nucleus | 24.74 | 26.84 |
KRH29448 | Soybean | nucleus | 29.17 | 26.6 |
KRH24463 | Soybean | nucleus | 27.86 | 26.49 |
KRH60839 | Soybean | nucleus | 29.17 | 26.05 |
Zm00001d031561_P002 | Maize | nucleus | 26.3 | 25.83 |
Zm00001d006065_P002 | Maize | nucleus | 23.44 | 25.71 |
Solyc01g109700.2.1 | Tomato | nucleus | 28.65 | 25.35 |
VIT_03s0038g04760.t01 | Wine grape | nucleus | 29.17 | 24.72 |
PGSC0003DMT400001888 | Potato | nucleus | 28.12 | 24.43 |
VIT_04s0023g01930.t01 | Wine grape | nucleus | 23.18 | 24.32 |
Zm00001d046759_P001 | Maize | plastid | 21.61 | 23.31 |
Zm00001d042373_P002 | Maize | nucleus | 27.6 | 22.89 |
Zm00001d020826_P001 | Maize | nucleus | 25.78 | 22.81 |
Zm00001d005964_P002 | Maize | nucleus | 26.56 | 22.52 |
Zm00001d012067_P003 | Maize | nucleus | 28.12 | 22.5 |
Zm00001d036807_P001 | Maize | nucleus | 21.61 | 22.43 |
Zm00001d013357_P001 | Maize | nucleus | 20.05 | 22.13 |
Zm00001d007311_P001 | Maize | nucleus | 25.52 | 21.26 |
Zm00001d049158_P001 | Maize | nucleus | 24.22 | 20.95 |
Protein Annotations
MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | UniProt:A0A1D6HHL2 | ProteinID:AQK74022.1 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF182 | SMART:SM00353 | SUPFAM:SSF47459 |
UniParc:UPI0008434F3F | EnsemblPlantsGene:Zm00001d017778 | EnsemblPlants:Zm00001d017778_P001 | EnsemblPlants:Zm00001d017778_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 29Transcription factor bHLH63
Coordinates
chr5:-:206414473..206416485
Molecular Weight (calculated)
40093.9 Da
IEP (calculated)
8.155
GRAVY (calculated)
-0.207
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AAMCGANLAV PPAVATPSAG DGNDSSSCSV SGGLRKRRPD AYLDAKGGAN GMNKRPRGKQ
101: QPSGLSEIAA APGKGKQERP KAGTKKKAEA AAAAAAAGQK TDYIHVRARR GQATDSHSLA ERVRRERISE RMRYLQELVP GCSKVTGKAG MLDEIINYVQ
201: SLQKQVEVPT HRHRPASSSP LLPASQLVIP RSLTAGSPCA QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CGPAAGQLEP SCLQMSMSPM QQVVHPSAAA
301: GSTGFGPLDM VLSNLYAPAA ASCPVSAAPS VSVAAGPSTI EPCLNVNGTA AAWDIGSQNL FSGFDAQFQS VESGCLLDNL KMEM
101: QPSGLSEIAA APGKGKQERP KAGTKKKAEA AAAAAAAGQK TDYIHVRARR GQATDSHSLA ERVRRERISE RMRYLQELVP GCSKVTGKAG MLDEIINYVQ
201: SLQKQVEVPT HRHRPASSSP LLPASQLVIP RSLTAGSPCA QFLSMKIAAS NPVVSFDIVE DLFGRQLKQA CGPAAGQLEP SCLQMSMSPM QQVVHPSAAA
301: GSTGFGPLDM VLSNLYAPAA ASCPVSAAPS VSVAAGPSTI EPCLNVNGTA AAWDIGSQNL FSGFDAQFQS VESGCLLDNL KMEM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.