Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | CDX86636 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDX89827 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY15503 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY18229 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011540.1-P | Field mustard | nucleus | 97.87 | 98.17 |
| CDX69067 | Canola | nucleus | 91.49 | 88.53 |
| CDY17466 | Canola | nucleus | 60.79 | 71.94 |
| CDX76288 | Canola | nucleus | 53.5 | 70.4 |
| AT4G34530.1 | Thale cress | nucleus | 70.21 | 68.96 |
| CDY25986 | Canola | plastid | 24.01 | 36.24 |
| CDY33821 | Canola | mitochondrion, plastid | 20.67 | 34.69 |
| CDY18099 | Canola | nucleus | 23.4 | 34.53 |
| CDY72360 | Canola | cytosol | 15.2 | 33.33 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 13.68 | 32.61 |
| CDX98249 | Canola | nucleus | 27.66 | 32.5 |
| CDY05670 | Canola | nucleus | 25.23 | 32.17 |
| CDY37979 | Canola | nucleus | 25.53 | 31.58 |
| CDY08308 | Canola | nucleus | 27.96 | 31.51 |
| CDX67710 | Canola | nucleus | 30.7 | 31.37 |
| CDX93427 | Canola | nucleus | 25.53 | 31.34 |
| CDX86296 | Canola | nucleus | 25.53 | 31.0 |
| CDX79883 | Canola | nucleus | 28.27 | 30.79 |
| CDY64034 | Canola | nucleus | 28.57 | 30.62 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 29.18 | 30.38 |
| CDY45806 | Canola | nucleus | 27.05 | 30.38 |
| CDY53497 | Canola | nucleus | 28.27 | 30.1 |
| CDX84885 | Canola | nucleus | 27.05 | 29.97 |
| KRH24463 | Soybean | nucleus | 36.47 | 29.7 |
| KRH51523 | Soybean | nucleus | 34.95 | 29.49 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 31.31 | 29.34 |
| CDY31048 | Canola | nucleus | 27.96 | 29.3 |
| Zm00001d051569_P001 | Maize | nucleus | 30.09 | 28.95 |
| CDX88966 | Canola | nucleus | 29.18 | 28.92 |
| KRH29448 | Soybean | nucleus | 36.78 | 28.74 |
| EES05656 | Sorghum | nucleus | 31.31 | 28.69 |
| CDX87255 | Canola | nucleus, plastid | 24.32 | 28.57 |
| CDY61581 | Canola | plastid | 15.81 | 28.42 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 31.0 | 28.25 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 30.4 | 28.25 |
| CDY56230 | Canola | nucleus | 28.57 | 28.23 |
| CDX85122 | Canola | nucleus | 28.27 | 28.1 |
| CDY06074 | Canola | nucleus | 30.4 | 28.09 |
| CDX77488 | Canola | nucleus | 27.96 | 27.96 |
| CDY20659 | Canola | nucleus | 28.27 | 27.93 |
| Os02t0705500-01 | Rice | nucleus | 30.4 | 27.7 |
| CDX71994 | Canola | nucleus | 30.09 | 27.42 |
| CDY22605 | Canola | nucleus | 28.88 | 26.91 |
| CDY53834 | Canola | nucleus | 28.27 | 26.8 |
| KRH60839 | Soybean | nucleus | 34.95 | 26.74 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 31.31 | 26.68 |
| CDY63738 | Canola | nucleus | 27.66 | 26.61 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 36.47 | 26.49 |
| Zm00001d017778_P001 | Maize | nucleus | 30.7 | 26.3 |
| PGSC0003DMT400001888 | Potato | nucleus | 34.04 | 25.34 |
| Solyc01g109700.2.1 | Tomato | nucleus | 32.83 | 24.88 |
| GSMUA_Achr10P... | Banana | nucleus | 29.48 | 24.13 |
| CDY61420 | Canola | extracellular | 9.73 | 23.53 |
| CDY57925 | Canola | nucleus | 27.96 | 23.12 |
| CDY47665 | Canola | cytosol | 17.93 | 22.96 |
| CDY51061 | Canola | nucleus | 30.09 | 22.86 |
| CDY35923 | Canola | nucleus, plastid | 30.4 | 22.32 |
| CDY45835 | Canola | nucleus | 30.4 | 22.08 |
| CDX95974 | Canola | nucleus | 31.31 | 21.5 |
| CDX81575 | Canola | nucleus | 31.0 | 21.47 |
| CDY28061 | Canola | nucleus | 29.48 | 21.41 |
| CDX85347 | Canola | nucleus | 31.91 | 21.38 |
| CDY33568 | Canola | nucleus | 31.31 | 21.37 |
| CDX86297 | Canola | nucleus | 31.61 | 21.22 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078CEY3 | EnsemblPlants:CDX75440 | ProteinID:CDX75440 |
| ProteinID:CDX75440.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00121331001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF49D9 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA01g02620D
Coordinates
chrLK031804:+:1107101..1108933
Molecular Weight (calculated)
36958.1 Da
IEP (calculated)
5.893
GRAVY (calculated)
-0.552
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMNGEATE AELFLNYADM SVLERQRAQL NYHHLPGFFS NSSTINGGEI DDGFLASAGL DLPEIYGEVH GDARISVSPG NITNESGNSK KRKFGCVDTE
101: TKVCNEKKKM MMMMDREVVV EEEEEKSKVT EQSTRSIMKM KNKAKKEQNS CSNDSSKVTK DSQRTDYIHV RARRGQATDS HSIAERARRE KISERMKFLQ
201: DLVPGCEKIT GKAGMLDEII NYVQSLQRQV EFLSMKLATV SPRLDFNIDD IFAKEVVSAP MMNLPNTVMP PHMMVNSGYP HDMVNSGYVH FNPMQQVVTS
301: SDPLACFNNG QSATMWDSDV QNLYSSLGV
101: TKVCNEKKKM MMMMDREVVV EEEEEKSKVT EQSTRSIMKM KNKAKKEQNS CSNDSSKVTK DSQRTDYIHV RARRGQATDS HSIAERARRE KISERMKFLQ
201: DLVPGCEKIT GKAGMLDEII NYVQSLQRQV EFLSMKLATV SPRLDFNIDD IFAKEVVSAP MMNLPNTVMP PHMMVNSGYP HDMVNSGYVH FNPMQQVVTS
301: SDPLACFNNG QSATMWDSDV QNLYSSLGV
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.