Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014603.1-P | Field mustard | nucleus | 97.59 | 93.64 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 34.04 | 81.88 |
| CDY47665 | Canola | cytosol | 60.84 | 78.6 |
| CDX67710 | Canola | nucleus | 73.49 | 75.78 |
| CDX98249 | Canola | nucleus | 61.75 | 73.21 |
| CDX71994 | Canola | nucleus | 78.31 | 72.02 |
| CDY06074 | Canola | nucleus | 76.81 | 71.63 |
| CDY53497 | Canola | nucleus | 61.75 | 66.34 |
| CDX79883 | Canola | nucleus | 59.64 | 65.56 |
| AT3G57800.1 | Thale cress | nucleus | 81.63 | 63.62 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 54.82 | 50.0 |
| KRG95332 | Soybean | nucleus | 53.01 | 48.09 |
| KRH71879 | Soybean | nucleus | 51.2 | 48.02 |
| KRH33022 | Soybean | nucleus | 50.3 | 46.78 |
| PGSC0003DMT400021130 | Potato | nucleus | 49.7 | 45.83 |
| Solyc10g079070.1.1 | Tomato | nucleus | 49.4 | 45.43 |
| KRH67006 | Soybean | nucleus | 51.81 | 43.0 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 39.76 | 42.04 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 39.76 | 41.77 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 45.18 | 41.1 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 47.59 | 40.83 |
| HORVU7Hr1G094690.1 | Barley | plastid | 29.22 | 39.27 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 18.07 | 38.96 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 33.43 | 38.28 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 41.57 | 37.7 |
| Zm00001d046759_P001 | Maize | plastid | 37.95 | 35.39 |
| Zm00001d036807_P001 | Maize | nucleus | 38.55 | 34.59 |
| CDY72360 | Canola | cytosol | 14.46 | 32.0 |
| OQU76702 | Sorghum | nucleus | 39.16 | 31.71 |
| CDX76288 | Canola | nucleus | 23.8 | 31.6 |
| CDY08308 | Canola | nucleus | 27.71 | 31.51 |
| CDY18099 | Canola | nucleus | 20.78 | 30.94 |
| CDY64034 | Canola | nucleus | 28.31 | 30.62 |
| CDY17466 | Canola | nucleus | 25.3 | 30.22 |
| CDX93427 | Canola | nucleus | 24.1 | 29.85 |
| CDY05670 | Canola | nucleus | 23.19 | 29.84 |
| CDY37979 | Canola | nucleus | 23.8 | 29.7 |
| CDX75440 | Canola | nucleus | 28.92 | 29.18 |
| CDY45806 | Canola | nucleus | 25.3 | 28.67 |
| CDY25986 | Canola | plastid | 18.67 | 28.44 |
| CDX86296 | Canola | nucleus | 23.19 | 28.41 |
| CDX69067 | Canola | nucleus | 28.92 | 28.24 |
| CDX84885 | Canola | nucleus | 25.0 | 27.95 |
| CDX87255 | Canola | nucleus, plastid | 22.89 | 27.14 |
| CDX77488 | Canola | nucleus | 26.81 | 27.05 |
| CDY56230 | Canola | nucleus | 26.81 | 26.73 |
| CDX85122 | Canola | nucleus | 26.51 | 26.59 |
| CDY33821 | Canola | mitochondrion, plastid | 15.66 | 26.53 |
| CDY31048 | Canola | nucleus | 23.8 | 25.16 |
| CDY20659 | Canola | nucleus | 24.7 | 24.62 |
| CDY28061 | Canola | nucleus | 32.53 | 23.84 |
| CDY51061 | Canola | nucleus | 31.02 | 23.79 |
| CDY35923 | Canola | nucleus, plastid | 31.93 | 23.66 |
| CDY53834 | Canola | nucleus | 24.4 | 23.34 |
| CDY22605 | Canola | nucleus | 24.7 | 23.23 |
| CDY45835 | Canola | nucleus | 30.42 | 22.3 |
| CDY63738 | Canola | nucleus | 22.89 | 22.22 |
| CDY61581 | Canola | plastid | 11.75 | 21.31 |
| CDX95974 | Canola | nucleus | 30.72 | 21.29 |
| CDX81575 | Canola | nucleus | 30.12 | 21.05 |
| CDY33568 | Canola | nucleus | 30.42 | 20.95 |
| CDY61420 | Canola | extracellular | 8.43 | 20.59 |
| CDX86297 | Canola | nucleus | 30.12 | 20.41 |
| CDX85347 | Canola | nucleus | 29.82 | 20.16 |
| CDY57925 | Canola | nucleus | 22.89 | 19.1 |
| Os09t0474051-01 | Rice | plastid | 17.77 | 10.09 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078DIB5 | EnsemblPlants:CDX88966 | ProteinID:CDX88966 |
| ProteinID:CDX88966.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00149075001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEDE80 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g02200D
Coordinates
chrLK031857:-:212734..216099
Molecular Weight (calculated)
36573.8 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.717
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGRFGAR SGDGVPFREA TALESLHLGG GGEEFRQMVP PENAGGFTAL LELPPTQAVE LLHSSSSSAS QATTLHSLGT LSFPSNPLLM ERASRFSVIA
101: TENQQNGNVS GETTTTSSVP SNEHIKTEPA ETETCDQAAV EKQSNRCGKR KELDKKVKSS TKKKSKSSEE NEKLPYVHVR ARRGQATDSH SLAERARREK
201: INARMKLLQE LVPGCDKIQG TALVLDEIIN HVQSLQRQVE MLSMRLASVN PRIDFNLDTI LASENGSLMD GSFSEQSYHH RQLQQPPSQQ WPFDGLNQPV
301: WGREENQDHG NDHNNLMVGS ASLHPNQVKM EL
101: TENQQNGNVS GETTTTSSVP SNEHIKTEPA ETETCDQAAV EKQSNRCGKR KELDKKVKSS TKKKSKSSEE NEKLPYVHVR ARRGQATDSH SLAERARREK
201: INARMKLLQE LVPGCDKIQG TALVLDEIIN HVQSLQRQVE MLSMRLASVN PRIDFNLDTI LASENGSLMD GSFSEQSYHH RQLQQPPSQQ WPFDGLNQPV
301: WGREENQDHG NDHNNLMVGS ASLHPNQVKM EL
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.