Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028335.1-P | Field mustard | nucleus | 94.29 | 94.58 |
| CDY18099 | Canola | nucleus | 63.06 | 94.17 |
| CDY72360 | Canola | cytosol | 42.04 | 93.33 |
| CDX85122 | Canola | nucleus | 81.08 | 81.57 |
| CDX77488 | Canola | nucleus | 79.28 | 80.24 |
| AT3G23690.1 | Thale cress | nucleus | 84.98 | 76.28 |
| CDY08308 | Canola | nucleus | 56.16 | 64.04 |
| CDY64034 | Canola | nucleus | 57.96 | 62.87 |
| CDY05670 | Canola | nucleus | 30.63 | 39.53 |
| CDX86296 | Canola | nucleus | 31.53 | 38.75 |
| CDY25986 | Canola | plastid | 24.32 | 37.16 |
| CDY33821 | Canola | mitochondrion, plastid | 21.32 | 36.22 |
| CDX76288 | Canola | nucleus | 25.83 | 34.4 |
| CDY37979 | Canola | nucleus | 27.03 | 33.83 |
| CDY45806 | Canola | nucleus | 29.73 | 33.79 |
| CDX93427 | Canola | nucleus | 27.03 | 33.58 |
| CDX84885 | Canola | nucleus | 29.13 | 32.66 |
| Solyc09g097870.2.1 | Tomato | nucleus | 40.24 | 31.09 |
| CDX87255 | Canola | nucleus, plastid | 26.13 | 31.07 |
| PGSC0003DMT400042791 | Potato | nucleus | 40.24 | 30.52 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 12.61 | 30.43 |
| CDY17466 | Canola | nucleus | 25.23 | 30.22 |
| CDY31048 | Canola | nucleus | 28.23 | 29.94 |
| Solyc12g098620.1.1 | Tomato | nucleus | 35.74 | 29.46 |
| CDX98249 | Canola | nucleus | 24.62 | 29.29 |
| CDY20659 | Canola | nucleus | 29.13 | 29.13 |
| PGSC0003DMT400011651 | Potato | nucleus | 36.04 | 29.06 |
| CDX75440 | Canola | nucleus | 28.23 | 28.57 |
| CDY61581 | Canola | plastid | 15.32 | 27.87 |
| CDX79883 | Canola | nucleus | 25.23 | 27.81 |
| CDY22605 | Canola | nucleus | 29.43 | 27.76 |
| CDY53834 | Canola | nucleus | 28.83 | 27.67 |
| CDX69067 | Canola | nucleus | 27.93 | 27.35 |
| CDY61420 | Canola | extracellular | 11.11 | 27.21 |
| CDX88966 | Canola | nucleus | 26.73 | 26.81 |
| CDX67710 | Canola | nucleus | 25.83 | 26.71 |
| CDY51061 | Canola | nucleus | 34.23 | 26.33 |
| CDY63738 | Canola | nucleus | 27.03 | 26.32 |
| CDX85347 | Canola | nucleus | 38.14 | 25.87 |
| CDX86297 | Canola | nucleus | 37.84 | 25.71 |
| CDY53497 | Canola | nucleus | 23.72 | 25.57 |
| CDY45835 | Canola | nucleus | 34.53 | 25.39 |
| CDX71994 | Canola | nucleus | 27.33 | 25.21 |
| CDY06074 | Canola | nucleus | 26.13 | 24.44 |
| CDY35923 | Canola | nucleus, plastid | 32.73 | 24.33 |
| CDY28061 | Canola | nucleus | 33.03 | 24.28 |
| CDX81575 | Canola | nucleus | 33.63 | 23.58 |
| CDY33568 | Canola | nucleus | 33.63 | 23.24 |
| CDX95974 | Canola | nucleus | 33.03 | 22.96 |
| CDY57925 | Canola | nucleus | 27.33 | 22.86 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 36.34 | 22.24 |
| CDY47665 | Canola | cytosol | 16.52 | 21.4 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078J2C2 | UniProt:A0A078J2C2 | EnsemblPlants:CDY56230 |
| ProteinID:CDY56230 | ProteinID:CDY56230.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00017993001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE1DA4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng29920DBnaCnng29920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2C2]
Coordinates
chrLK033470:-:20519..22904
Molecular Weight (calculated)
36636.8 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.832
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQTLKYLP LGQSDPFGNV IGNGNGNEGT IGDLLGRFRN CPQESFSAGI RFPPYPGQFG SDRDSNKSSL LDPDSDRVQT PKPNPRKRKS IPVGNGKGSP
101: ASSSLTASHS KVSGENVVSK DGKRSKQDEA GSSKNVIDKC DDSKGDNKDD ANPTKDYIHV RARRGQATDS HSLAERARRE KISERMTMLQ DLVPGCNRIT
201: GKAVMLDEII NYVQSLQRQV QFLSMKLATV NPRMEFNANA ALSTEGESLT QSLYAMACSE QRLPSGGYYS LAKNMPRFSD THFPSSDGFV QTETQGFWEN
301: DLQSIVQMGF GDIQQQQSNN NCPEPTLQMK LEP
101: ASSSLTASHS KVSGENVVSK DGKRSKQDEA GSSKNVIDKC DDSKGDNKDD ANPTKDYIHV RARRGQATDS HSLAERARRE KISERMTMLQ DLVPGCNRIT
201: GKAVMLDEII NYVQSLQRQV QFLSMKLATV NPRMEFNANA ALSTEGESLT QSLYAMACSE QRLPSGGYYS LAKNMPRFSD THFPSSDGFV QTETQGFWEN
301: DLQSIVQMGF GDIQQQQSNN NCPEPTLQMK LEP
001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
Arabidopsis Description
BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.