Factsheet for VIT_05s0029g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72360	Canola	cytosol	11.76	42.67
CDY25986	Canola	plastid	16.36	40.83
CDY18099	Canola	nucleus	16.54	40.36
CDY33821	Canola	mitochondrion, plastid	14.15	39.29
Bra037059.1-P	Field mustard	nucleus	19.85	37.76
CDY08308	Canola	nucleus	20.22	37.67
Bra028335.1-P	Field mustard	nucleus	22.79	37.35
CDY64034	Canola	nucleus	20.77	36.81
Bra014972.1-P	Field mustard	nucleus	22.24	36.78
CDX77488	Canola	nucleus	22.24	36.78
VIT_17s0000g05370.t01	Wine grape	nucleus	19.12	36.62
CDY56230	Canola	nucleus	22.24	36.34
CDX85122	Canola	nucleus	22.06	36.25
VIT_01s0010g00740.t01	Wine grape	nucleus	30.88	35.82
Solyc09g097870.2.1	Tomato	nucleus	28.12	35.5
PGSC0003DMT400042791	Potato	nucleus	28.12	34.85
VIT_01s0026g01140.t01	Wine grape	nucleus	17.65	34.66
AT3G23690.1	Thale cress	nucleus	22.98	33.69
VIT_01s0244g00010.t01	Wine grape	nucleus	16.36	32.96
Solyc12g098620.1.1	Tomato	nucleus	24.26	32.67
PGSC0003DMT400011651	Potato	nucleus	24.63	32.45
CDY61581	Canola	plastid	10.85	32.24
VIT_18s0001g08600.t01	Wine grape	nucleus	25.0	31.63
VIT_17s0000g00430.t01	Wine grape	nucleus	19.67	30.66
VIT_07s0151g00450.t01	Wine grape	nucleus	22.61	29.64
VIT_04s0023g01930.t01	Wine grape	nucleus	19.85	29.51
VIT_08s0007g07870.t01	Wine grape	nucleus	19.3	28.85
VIT_03s0038g04760.t01	Wine grape	nucleus	22.61	27.15

Protein Annotations

EntrezGene:100259005	wikigene:100259005	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:AM423529
ProteinID:CAN73299	ProteinID:CAN73299.1	ProteinID:CCB44310	ProteinID:CCB44310.1	UniProt:F6GWE7	EMBL:FN594958
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100259005	wikigene:LOC100259005	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000210836C	ArrayExpress:VIT_05s0029g00390	EnsemblPlantsGene:VIT_05s0029g00390
EnsemblPlants:VIT_05s0029g00390.t01	RefSeq:XP_002264969	RefSeq:XP_002264969.2	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:15017477..15020155

Molecular Weight (calculated)

58544.0 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.776

Length

544 amino acids

Sequence
(BLAST)

001: MEIQSNELNC SSQAVQNCFL NPNWDNSMDQ SDPFESALSS IVSSPVGSSA GGMPGDSIAI RELIGRLGSI CNSGEISPQS YIGGGGHGNT NNSNNTSCYN
101: TPLNSPPKLN LSIMDHQQHQ IRTNFPTNHL PTHPSLAPFP ADPGFAERAA RFSCFGTGNF SGLSAQFGLN DTELPYRSST GKLSRVSSNQ SFKAAGSQLG
201: AQEFKDRSPP QDGVSASDKK LGKISRSSTP DNTELGDSRE ESSVSEQIPG GETSLKGQND ANGRKRKSIP RGKAKEVPSS PSAKDAKVAS DKDESNAKRS
301: KPDEGSGSEK DAAKAKAEAN GSTKSAGDGN QKQSKDNPKP PEAPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII
401: NYVQSLQRQV EFLSMKLATV NPRMDFNMEA LLSKEIFQSR GSLPQAMYPL DSSALAFPYG YQPQQGPSLQ NGIPNGTETP FSVNPLNSAI RRTSSMLPSI
501: DGFGEAASQV STFWEDELHS VVQMGIGQNQ PQGFPGKKNK RLPR

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.