Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0049g00960.t01 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | VIT_05s0049g00960.t01 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51523 | Soybean | nucleus | 48.12 | 55.9 |
| KRH29448 | Soybean | nucleus | 51.21 | 55.11 |
| KRH24463 | Soybean | nucleus | 48.57 | 54.46 |
| PGSC0003DMT400001888 | Potato | nucleus | 51.43 | 52.71 |
| Solyc01g109700.2.1 | Tomato | nucleus | 49.45 | 51.61 |
| KRH60839 | Soybean | nucleus | 48.34 | 50.93 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 34.0 | 42.08 |
| CDX76288 | Canola | nucleus | 21.41 | 38.8 |
| Bra034636.1-P | Field mustard | nucleus | 23.84 | 38.43 |
| CDY17466 | Canola | nucleus | 23.18 | 37.77 |
| AT4G34530.1 | Thale cress | nucleus | 27.37 | 37.01 |
| Bra011540.1-P | Field mustard | nucleus | 26.71 | 36.89 |
| CDX75440 | Canola | nucleus | 26.49 | 36.47 |
| VIT_01s0026g01140.t01 | Wine grape | nucleus | 21.85 | 35.74 |
| VIT_01s0244g00010.t01 | Wine grape | nucleus | 21.19 | 35.56 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 24.72 | 35.44 |
| CDX69067 | Canola | nucleus | 25.83 | 34.41 |
| VIT_17s0000g05370.t01 | Wine grape | nucleus | 20.75 | 33.1 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 24.06 | 31.05 |
| EES05656 | Sorghum | nucleus | 24.5 | 30.92 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 24.06 | 30.79 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 24.28 | 30.47 |
| Os02t0705500-01 | Rice | nucleus | 24.06 | 30.19 |
| Zm00001d051569_P001 | Maize | nucleus | 22.74 | 30.12 |
| GSMUA_Achr10P... | Banana | nucleus | 26.49 | 29.85 |
| Zm00001d017778_P001 | Maize | nucleus | 24.72 | 29.17 |
| VIT_07s0151g00450.t01 | Wine grape | nucleus | 26.71 | 29.16 |
| VIT_18s0001g08600.t01 | Wine grape | nucleus | 27.59 | 29.07 |
| VIT_17s0000g00430.t01 | Wine grape | nucleus | 22.3 | 28.94 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 24.28 | 28.5 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 22.3 | 27.75 |
| VIT_01s0010g00740.t01 | Wine grape | nucleus | 27.15 | 26.23 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 27.15 | 22.61 |
Protein Annotations
| EntrezGene:100252098 | wikigene:100252098 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ProteinID:CCB60471 |
| ProteinID:CCB60471.1 | UniProt:F6I0K5 | EMBL:FN596508 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100252098 | wikigene:LOC100252098 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:TC62782 | UniParc:UPI00021094B1 | ArrayExpress:VIT_03s0038g04760 | EnsemblPlantsGene:VIT_03s0038g04760 | EnsemblPlants:VIT_03s0038g04760.t01 | unigene:Vvi.14924 |
| unigene:Vvi.25528 | RefSeq:XP_002284113 | RefSeq:XP_002284113.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr3:-:3488696..3491589
Molecular Weight (calculated)
49778.6 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.528
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPEMLHCL STSGNVAGNG TDMTVFERQR VRMKWQQEQF QQQQQQQQQS YFGGNEFSMF SMGGQVGQAQ QFHGLINGDS AGVGDLLGRA VKADPGLENV
101: WPEFGKLTMP GTGFNVENAG FESAGILNCS GFEMNHTTSR TSSCPLAAAE AKVRESVLPE KIASAVGRES FKKRKADKVQ SPKVVAEEET KDKRIKGCAE
201: DGESKITEAN NNKNSTTTTT TTATTTTTNN NNRETSADTS KVSEVQKPDY IHVRARRGQA TDSHSLAERV RREKISERMK YLQDLVPGCN KITGKAGMLD
301: EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN IDNFLAKEVF PACAANFPTI GMSSEMTNPS YLHYDPIQQV ATCGVEMGIN PAEIALRRTI SAPVSIPDTF
401: LDSCFTQIQP SSTWDADLQN LYGPEFHQGR LMSFPSQAAF TGPIDASNLK MEM
101: WPEFGKLTMP GTGFNVENAG FESAGILNCS GFEMNHTTSR TSSCPLAAAE AKVRESVLPE KIASAVGRES FKKRKADKVQ SPKVVAEEET KDKRIKGCAE
201: DGESKITEAN NNKNSTTTTT TTATTTTTNN NNRETSADTS KVSEVQKPDY IHVRARRGQA TDSHSLAERV RREKISERMK YLQDLVPGCN KITGKAGMLD
301: EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN IDNFLAKEVF PACAANFPTI GMSSEMTNPS YLHYDPIQQV ATCGVEMGIN PAEIALRRTI SAPVSIPDTF
401: LDSCFTQIQP SSTWDADLQN LYGPEFHQGR LMSFPSQAAF TGPIDASNLK MEM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.