Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d045944_P007 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | Zm00001d045944_P007 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05656 | Sorghum | nucleus | 87.13 | 83.01 |
| Zm00001d017778_P001 | Maize | nucleus | 83.92 | 74.74 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 64.04 | 62.39 |
| Os02t0705500-01 | Rice | nucleus | 65.5 | 62.05 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 62.57 | 60.45 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 63.45 | 60.11 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 64.33 | 56.99 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 36.26 | 39.24 |
| CDX76288 | Canola | nucleus | 25.15 | 34.4 |
| Solyc03g034000.2.1 | Tomato | nucleus | 25.73 | 33.08 |
| PGSC0003DMT400058169 | Potato | nucleus | 25.44 | 32.46 |
| Zm00001d007768_P001 | Maize | nucleus | 23.68 | 32.27 |
| GSMUA_Achr10P... | Banana | nucleus | 37.43 | 31.84 |
| Zm00001d034503_P002 | Maize | nucleus | 23.68 | 31.76 |
| Bra034636.1-P | Field mustard | nucleus | 26.02 | 31.67 |
| Zm00001d021086_P001 | Maize | nucleus, plastid | 26.32 | 31.36 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 27.78 | 31.15 |
| CDY17466 | Canola | nucleus | 25.15 | 30.94 |
| PGSC0003DMT400040021 | Potato | nucleus | 27.19 | 30.69 |
| Zm00001d031665_P001 | Maize | mitochondrion | 28.07 | 30.48 |
| Zm00001d049870_P001 | Maize | nucleus | 28.36 | 30.41 |
| CDX75440 | Canola | nucleus | 28.95 | 30.09 |
| Bra011540.1-P | Field mustard | nucleus | 28.66 | 29.88 |
| AT4G34530.1 | Thale cress | nucleus | 28.95 | 29.55 |
| Zm00001d006110_P002 | Maize | nucleus, plastid | 26.9 | 28.66 |
| CDX69067 | Canola | nucleus | 28.36 | 28.53 |
| Zm00001d033870_P001 | Maize | nucleus | 26.61 | 28.17 |
| KRH51523 | Soybean | nucleus | 30.99 | 27.18 |
| Zm00001d006065_P002 | Maize | nucleus | 26.32 | 25.71 |
| KRH24463 | Soybean | nucleus | 30.12 | 25.5 |
| Zm00001d021019_P001 | Maize | nucleus | 26.32 | 25.42 |
| KRH60839 | Soybean | nucleus | 31.29 | 24.88 |
| Zm00001d031561_P002 | Maize | nucleus | 27.78 | 24.3 |
| KRH29448 | Soybean | nucleus | 29.82 | 24.23 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 25.44 | 23.77 |
| Solyc01g109700.2.1 | Tomato | nucleus | 29.82 | 23.5 |
| PGSC0003DMT400001888 | Potato | nucleus | 30.12 | 23.3 |
| Zm00001d046759_P001 | Maize | plastid | 23.98 | 23.03 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 30.12 | 22.74 |
| Zm00001d020826_P001 | Maize | nucleus | 28.36 | 22.35 |
| Zm00001d013357_P001 | Maize | nucleus | 22.51 | 22.13 |
| Zm00001d036807_P001 | Maize | nucleus | 23.68 | 21.89 |
| Zm00001d042373_P002 | Maize | nucleus | 29.53 | 21.81 |
| Zm00001d012067_P003 | Maize | nucleus | 30.41 | 21.67 |
| Zm00001d005964_P002 | Maize | nucleus | 28.66 | 21.63 |
| Zm00001d049158_P001 | Maize | nucleus | 27.49 | 21.17 |
| Zm00001d007311_P001 | Maize | nucleus | 27.19 | 20.17 |
Protein Annotations
| EntrezGene:100273484 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ProteinID:AQK54582.1 | UniProt:B4FVV0 |
| EMBL:BT041238 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EMBL:KJ727945 | PFAM:PF00010 | PFscan:PS50888 | PFscan:PS51257 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF182 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00017B7FA9 | EnsemblPlantsGene:Zm00001d051569 |
| EnsemblPlants:Zm00001d051569_P001 | EnsemblPlants:Zm00001d051569_T001 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
bHLH-transcription factor 11Transcription factor bHLH63
Coordinates
chr4:-:162992089..162994208
Molecular Weight (calculated)
35828.6 Da
IEP (calculated)
8.557
GRAVY (calculated)
-0.309
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MARCRGTAES LCQGRLDLDD DKFGAMCTTA FGCLQEWPDL GAMCGANLGV PAMAGNGNES SCSGSGGSRK RKPDAYDGLD ATGGANDMSK RPRGKRLSGI
101: SEIVAPGKGK QERPKAGTKK KAEAASAAAA AAAAGHKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD EIINYVQSLQ
201: KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQSRRSPAAA LPAMALPAGQ LEPSCLQMSH MPQMHPSAAA NSTGFGLDMV VNNPYAPAGA SCPVSAAASV
301: SVAAGPSTTE PCLNVNGTAA WDIGSRNLFS GFVAQFQSVE SE
101: SEIVAPGKGK QERPKAGTKK KAEAASAAAA AAAAGHKTDY IHVRARRGQA TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD EIINYVQSLQ
201: KQVEFLSMKI AASNPVVSFD IVEDLFGRQL KQSRRSPAAA LPAMALPAGQ LEPSCLQMSH MPQMHPSAAA NSTGFGLDMV VNNPYAPAGA SCPVSAAASV
301: SVAAGPSTTE PCLNVNGTAA WDIGSRNLFS GFVAQFQSVE SE
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.