Factsheet for Os02t0705500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0625000-01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34530.1	Os02t0625000-01	AT1G04400.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05656	Sorghum	nucleus	68.42	68.8
Zm00001d051569_P001	Maize	nucleus	62.05	65.5
TraesCS6B01G300400.1	Wheat	nucleus	61.22	62.96
Zm00001d017778_P001	Maize	nucleus	66.48	62.5
TraesCS6D01G253000.1	Wheat	nucleus	60.94	62.15
TraesCS6A01G273000.2	Wheat	nucleus	61.77	61.77
HORVU6Hr1G068980.2	Barley	nucleus	61.22	57.25
GSMUA_Achr6P09050_001	Banana	nucleus	33.52	38.29
Os07t0193800-01	Rice	endoplasmic reticulum	21.88	37.98
Os06t0613500-01	Rice	cytosol, nucleus	18.28	37.08
Os03t0802900-01	Rice	nucleus	25.48	34.72
CDX76288	Canola	nucleus	23.82	34.4
GSMUA_Achr10P...	Banana	nucleus	37.95	34.08
Os04t0350700-01	Rice	nucleus	24.65	33.84
PGSC0003DMT400058169	Potato	nucleus	24.38	32.84
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	27.7	32.79
Solyc03g034000.2.1	Tomato	nucleus	24.1	32.71
Bra034636.1-P	Field mustard	nucleus	25.21	32.38
PGSC0003DMT400040021	Potato	nucleus	26.59	31.68
CDY17466	Canola	nucleus	24.38	31.65
Os03t0728900-00	Rice	cytosol, nucleus	22.99	30.74
CDX75440	Canola	nucleus	27.7	30.4
Bra011540.1-P	Field mustard	nucleus	27.42	30.18
AT4G34530.1	Thale cress	nucleus	27.42	29.55
Os09t0510500-01	Rice	nucleus	22.99	29.43
CDX69067	Canola	nucleus	27.15	28.82
KRH51523	Soybean	nucleus	29.92	27.69
Os08t0536800-01	Rice	cytosol, nucleus, plastid	22.99	26.86
KRH29448	Soybean	nucleus	31.3	26.84
KRH24463	Soybean	nucleus	29.09	25.99
Os08t0524800-01	Rice	nucleus	28.53	25.43
Os09t0501600-01	Rice	nucleus	25.48	25.14
KRH60839	Soybean	nucleus	29.92	25.12
Solyc01g109700.2.1	Tomato	nucleus	29.92	24.88
PGSC0003DMT400001888	Potato	nucleus	29.92	24.43
VIT_04s0023g01930.t01	Wine grape	nucleus	24.65	24.32
VIT_03s0038g04760.t01	Wine grape	nucleus	30.19	24.06
Os05t0103000-01	Rice	nucleus	21.05	22.42
Os01t0915600-01	Rice	nucleus	29.64	22.25
Os09t0474100-01	Rice	nucleus	26.32	22.2
Os11t0442500-00	Rice	nucleus	22.99	22.13
Os08t0487700-00	Rice	nucleus	19.67	20.7
Os06t0275600-01	Rice	cytosol, nucleus	24.93	20.59
Os09t0474051-01	Rice	plastid	13.02	8.03

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:4330462	EMBL:AK119183	ProteinID:BAD08039.1
ProteinID:BAF09782.1	ProteinID:BAS80517.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlantsGene:Os02g0705500	EnsemblPlants:Os02t0705500-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF182	UniProt:Q6Z2G7	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000023689A	RefSeq:XP_015627481.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

basic helix-loop-helix protein 079Helix-loop-helix DNA-binding domain containing protein. (Os02t0705500-01);Helix-loop-helix DNA-binding domain containing protein. (Os02t0705500-02)

Coordinates

chr2:-:29117082..29119291

Molecular Weight (calculated)

38640.9 Da

IEP (calculated)

7.338

GRAVY (calculated)

-0.484

Length

361 amino acids

Sequence
(BLAST)

001: MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LASMCYGSLG GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSICKR
101: QRGKQQQQQQ PCHPDQMAAA VGKGRPERAR PGAKKKAEVA SPKDSPATSA STVTAGQKTD YIHVRARRGQ ATDSHSLAER VRRERISERM RYLQELVPGC
201: NKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF NIVEDLFGRQ LSQAACNPAA LPAMALPMAQ VEPSCLQMSP LQQMQTSAGS SGYGLEMVVS
301: NQYSPPGGPM SVPAGASVEP CLNVNGAAGW DIGSHGLFSG FDAPFQSVQS DCLLDNLKME M

Best Arabidopsis Sequence Match ( AT4G34530.1 )
(BLAST)

001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV

Arabidopsis Description

BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.