Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G223700.1 | nucleus |
| TraesCS6B01G257600.2 | nucleus |
| TraesCS6D01G211700.1 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | TraesCS6A01G223700.1 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | TraesCS6B01G257600.2 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | TraesCS6D01G211700.1 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G300400.1 | Wheat | nucleus | 91.24 | 92.02 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 92.66 | 90.86 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 87.85 | 80.57 |
| EES05656 | Sorghum | nucleus | 63.84 | 62.95 |
| Zm00001d051569_P001 | Maize | nucleus | 60.45 | 62.57 |
| Os02t0705500-01 | Rice | nucleus | 62.15 | 60.94 |
| Zm00001d017778_P001 | Maize | nucleus | 64.69 | 59.64 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 34.75 | 38.92 |
| CDX76288 | Canola | nucleus | 24.29 | 34.4 |
| GSMUA_Achr10P... | Banana | nucleus | 38.98 | 34.33 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 29.1 | 33.77 |
| PGSC0003DMT400040021 | Potato | nucleus | 28.81 | 33.66 |
| Solyc03g034000.2.1 | Tomato | nucleus | 24.86 | 33.08 |
| PGSC0003DMT400058169 | Potato | nucleus | 24.86 | 32.84 |
| Bra034636.1-P | Field mustard | nucleus | 25.71 | 32.38 |
| CDY17466 | Canola | nucleus | 24.58 | 31.3 |
| TraesCS5D01G459800.1 | Wheat | nucleus, plastid | 22.03 | 30.95 |
| TraesCS5D01G300100.1 | Wheat | nucleus | 24.01 | 30.8 |
| Bra011540.1-P | Field mustard | nucleus | 28.53 | 30.79 |
| CDX75440 | Canola | nucleus | 28.25 | 30.4 |
| AT4G34530.1 | Thale cress | nucleus | 27.97 | 29.55 |
| CDX69067 | Canola | nucleus | 27.68 | 28.82 |
| KRH51523 | Soybean | nucleus | 30.79 | 27.95 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 24.58 | 27.53 |
| KRH29448 | Soybean | nucleus | 31.92 | 26.84 |
| KRH24463 | Soybean | nucleus | 30.51 | 26.73 |
| TraesCS4D01G058900.1 | Wheat | nucleus | 23.73 | 26.58 |
| TraesCS7D01G264600.3 | Wheat | nucleus | 25.14 | 26.57 |
| TraesCS7D01G257000.2 | Wheat | nucleus | 28.81 | 26.36 |
| KRH60839 | Soybean | nucleus | 30.79 | 25.35 |
| Solyc01g109700.2.1 | Tomato | nucleus | 30.51 | 24.88 |
| TraesCS5D01G286300.5 | Wheat | nucleus | 26.27 | 24.8 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 25.42 | 24.59 |
| PGSC0003DMT400001888 | Potato | nucleus | 30.51 | 24.43 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 30.79 | 24.06 |
| TraesCS3D01G417300.2 | Wheat | nucleus | 30.51 | 22.55 |
| TraesCS5D01G258300.1 | Wheat | nucleus | 26.84 | 22.41 |
| TraesCS2D01G274600.1 | Wheat | nucleus | 25.42 | 21.95 |
| TraesCS7D01G213500.1 | Wheat | nucleus | 26.55 | 21.36 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G253000.1 | EnsemblPlantsGene:TraesCS6D01G253000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF182 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:357011842..357013754
Molecular Weight (calculated)
37600.2 Da
IEP (calculated)
6.497
GRAVY (calculated)
-0.482
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHCGGGPGP AAPREASSVE SHFQGLLDDD DKYRALCGAF GYLQQQEWPD LSGACYAAFG APPPPGTSNG AGNSFSCSGS ASSGGGSTKR KPDAYVDAKD
101: DCKRPRGKQQ LCDPDEAGAA AKGRPEKAKA CARKKPEPAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ ELVPGCDKVT GKAGMLDEII
201: NYVQSLQKQV EFLSMKIAAS NPVVNFNIVD DLFGGRRMNQ ACGPSMTTLP MHQGQLDPSC LQMSSATMQQ MQQPAAGFGQ DMLVNNPYPA AQSAPPSAAA
301: TPVSMSAAAS VESCLDVNGA AAWDIASQHL FSGFDAQFQP VQSDCLLDNL KMEM
101: DCKRPRGKQQ LCDPDEAGAA AKGRPEKAKA CARKKPEPAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ ELVPGCDKVT GKAGMLDEII
201: NYVQSLQKQV EFLSMKIAAS NPVVNFNIVD DLFGGRRMNQ ACGPSMTTLP MHQGQLDPSC LQMSSATMQQ MQQPAAGFGQ DMLVNNPYPA AQSAPPSAAA
301: TPVSMSAAAS VESCLDVNGA AAWDIASQHL FSGFDAQFQP VQSDCLLDNL KMEM
001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ AYFTNVVASK QSIMVDVPLF PLDQQGSLDL
301: SAINPNQTTS IEAPSGSWET QSQSLYNTSS LGFHY
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ AYFTNVVASK QSIMVDVPLF PLDQQGSLDL
301: SAINPNQTTS IEAPSGSWET QSQSLYNTSS LGFHY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.