Factsheet for PGSC0003DMT400040021

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	93.07	92.46
PGSC0003DMT400058169	Potato	nucleus	47.52	53.73
PGSC0003DMT400004855	Potato	nucleus	27.72	38.01
VIT_04s0023g01930.t01	Wine grape	nucleus	43.56	36.07
PGSC0003DMT400058204	Potato	nucleus	28.05	31.48
TraesCS6B01G300400.1	Wheat	nucleus	33.66	29.06
TraesCS6D01G253000.1	Wheat	nucleus	33.66	28.81
TraesCS6A01G273000.2	Wheat	nucleus	34.32	28.81
GSMUA_Achr6P09050_001	Banana	nucleus	30.03	28.8
PGSC0003DMT400069568	Potato	nucleus	26.4	28.17
PGSC0003DMT400001888	Potato	nucleus	40.92	28.05
PGSC0003DMT400062844	Potato	nucleus	26.73	27.84
Zm00001d051569_P001	Maize	nucleus	30.69	27.19
EES05656	Sorghum	nucleus	31.68	26.74
Os02t0705500-01	Rice	nucleus	31.68	26.59
PGSC0003DMT400051137	Potato	nucleus	29.37	26.33
HORVU6Hr1G068980.2	Barley	nucleus	33.33	26.17
PGSC0003DMT400021130	Potato	nucleus	30.36	25.56
Zm00001d017778_P001	Maize	nucleus	31.35	24.74
PGSC0003DMT400042791	Potato	nucleus	34.32	23.69
PGSC0003DMT400011651	Potato	nucleus	32.01	23.49
PGSC0003DMT400012591	Potato	nucleus	28.71	22.77
GSMUA_Achr10P...	Banana	nucleus	30.03	22.64
PGSC0003DMT400053639	Potato	nucleus	35.97	22.15
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	33.99	22.06
PGSC0003DMT400004830	Potato	nucleus	33.33	21.81
PGSC0003DMT400050585	Potato	nucleus	34.98	20.38
PGSC0003DMT400022704	Potato	nucleus	35.31	20.0

Protein Annotations

EntrezGene:102588889	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1B961	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400015482	PGSC:PGSC0003DMG400015482	EnsemblPlants:PGSC0003DMT400040021	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002954B83	RefSeq:XP_006346952.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Transcription factor bHLH63 [Source:PGSC_GENE;Acc:PGSC0003DMG400015482]

Coordinates

chr2:-:20957214..20958815

Molecular Weight (calculated)

34209.4 Da

IEP (calculated)

7.020

GRAVY (calculated)

-0.627

Length

303 amino acids

Sequence
(BLAST)

001: MLQMSVLERQ RAVLERLYNH SKQQLSSLPQ QELAHLFTGC FQGNFNNFNM FGGRESNFVN CQEMARPSFS TVSNSSITTV SPPPEKENDL STMIAPRENV
101: VSTKKRKAEF SEEEDCEKCP GNDSKENSKT SEVQKPDYIH VRARRGQATD SHSLAERARR EKISKKMKYL QDLVPGCNKV TGKAGMLDEI INYVQSLQKQ
201: VEFLSMKLAT LNPRLDLNTD NIFAKDFPSY MTTTFPPTVA IPTLSEYNII QHQQAGSTGD VAQRRDLMSF PDTYLGSSPL TVVQQQQPTF EPDLQSLFSV
301: GFN

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.