Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G058740.2 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | HORVU6Hr1G058740.2 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G300400.1 | Wheat | nucleus | 82.9 | 91.17 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 80.57 | 87.85 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 81.61 | 87.26 |
| Zm00001d051569_P001 | Maize | nucleus | 56.99 | 64.33 |
| EES05656 | Sorghum | nucleus | 59.59 | 64.07 |
| Zm00001d017778_P001 | Maize | nucleus | 62.44 | 62.76 |
| Os02t0705500-01 | Rice | nucleus | 57.25 | 61.22 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 32.64 | 39.87 |
| GSMUA_Achr10P... | Banana | nucleus | 36.79 | 35.32 |
| CDX76288 | Canola | nucleus | 22.54 | 34.8 |
| HORVU5Hr1G107520.2 | Barley | cytosol, nucleus | 18.65 | 34.78 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 26.42 | 33.44 |
| PGSC0003DMT400040021 | Potato | nucleus | 26.17 | 33.33 |
| Bra034636.1-P | Field mustard | nucleus | 23.83 | 32.74 |
| Solyc03g034000.2.1 | Tomato | nucleus | 22.28 | 32.33 |
| PGSC0003DMT400058169 | Potato | nucleus | 22.28 | 32.09 |
| CDY17466 | Canola | nucleus | 23.06 | 32.01 |
| HORVU7Hr1G055180.4 | Barley | nucleus, plastid | 24.35 | 31.97 |
| Bra011540.1-P | Field mustard | nucleus | 26.94 | 31.71 |
| CDX75440 | Canola | nucleus | 26.68 | 31.31 |
| HORVU5Hr1G077390.1 | Barley | nucleus | 22.54 | 31.18 |
| HORVU7Hr1G094690.1 | Barley | plastid | 19.69 | 30.77 |
| AT4G34530.1 | Thale cress | nucleus | 26.68 | 30.75 |
| CDX69067 | Canola | nucleus | 26.17 | 29.71 |
| KRH51523 | Soybean | nucleus | 28.76 | 28.46 |
| KRH24463 | Soybean | nucleus | 28.5 | 27.23 |
| KRH29448 | Soybean | nucleus | 29.53 | 27.08 |
| HORVU4Hr1G009970.28 | Barley | nucleus | 22.54 | 26.93 |
| KRH60839 | Soybean | nucleus | 29.02 | 26.05 |
| HORVU7Hr1G052870.23 | Barley | nucleus | 25.39 | 24.94 |
| Solyc01g109700.2.1 | Tomato | nucleus | 27.98 | 24.88 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 23.58 | 24.86 |
| PGSC0003DMT400001888 | Potato | nucleus | 28.24 | 24.66 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 28.5 | 24.28 |
| HORVU5Hr1G075430.5 | Barley | nucleus, plastid | 24.61 | 22.3 |
| HORVU0Hr1G020200.1 | Barley | nucleus | 24.61 | 21.59 |
| HORVU3Hr1G093310.2 | Barley | nucleus, plasma membrane, plastid | 27.98 | 16.98 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G068980.2 | EnsemblPlantsGene:HORVU6Hr1G068980 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF182 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B47D0EC | UniProt:A0A287UK34 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:477797702..477804133
Molecular Weight (calculated)
40797.5 Da
IEP (calculated)
8.012
GRAVY (calculated)
-0.352
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHCGGGGGG PGPAASVESH FQGLLDDDDK YRALCGAFGY LQQQEWPDLS GACYAAFGAP PPPPAGTSNG AGNSFSRSGS ASSGGGSTKR KPDAYLDAKD
101: GCKRPRGKQQ LRDPDEAGGA AKGRPEKPKA CARKKPEAAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ ELVPGCDKVT GKAGMLDEII
201: NYVQSLQKQV EVRITASTTR LIPLLSCEDH VACFLPLGMA ARAQFLSMKI AAANPVVNFN IVDDLFGGRR MSQPCGPAAA LPAMTLPMHH GQLDPSCLQM
301: SNTAMQQMQQ PAAGFGLDMV LNHPYPLRSA AATPASASAA TSVESCLDVN GAAAWDIASQ NLFSGFDAQF QSVQSGCLLD NLKMEL
101: GCKRPRGKQQ LRDPDEAGGA AKGRPEKPKA CARKKPEAAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ ELVPGCDKVT GKAGMLDEII
201: NYVQSLQKQV EVRITASTTR LIPLLSCEDH VACFLPLGMA ARAQFLSMKI AAANPVVNFN IVDDLFGGRR MSQPCGPAAA LPAMTLPMHH GQLDPSCLQM
301: SNTAMQQMQQ PAAGFGLDMV LNHPYPLRSA AATPASASAA TSVESCLDVN GAAAWDIASQ NLFSGFDAQF QSVQSGCLLD NLKMEL
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.