Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | CDX86636 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDX89827 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY15503 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY18229 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76288 | Canola | nucleus | 84.53 | 94.0 |
| CDX75440 | Canola | nucleus | 71.94 | 60.79 |
| CDX69067 | Canola | nucleus | 70.14 | 57.35 |
| AT4G34530.1 | Thale cress | nucleus | 65.83 | 54.63 |
| CDY18099 | Canola | nucleus | 25.9 | 32.29 |
| CDY25986 | Canola | plastid | 24.1 | 30.73 |
| CDY33821 | Canola | mitochondrion, plastid | 21.22 | 30.1 |
| CDY37979 | Canola | nucleus | 28.42 | 29.7 |
| CDX93427 | Canola | nucleus | 28.42 | 29.48 |
| CDY05670 | Canola | nucleus | 26.98 | 29.07 |
| CDY45806 | Canola | nucleus | 30.22 | 28.67 |
| CDY08308 | Canola | nucleus | 29.86 | 28.42 |
| CDX86296 | Canola | nucleus | 27.7 | 28.41 |
| CDX84885 | Canola | nucleus | 29.86 | 27.95 |
| CDX79883 | Canola | nucleus | 30.22 | 27.81 |
| CDX98249 | Canola | nucleus | 27.7 | 27.5 |
| CDY64034 | Canola | nucleus | 30.22 | 27.36 |
| CDY72360 | Canola | cytosol | 14.39 | 26.67 |
| CDY53497 | Canola | nucleus | 29.5 | 26.54 |
| KRH51523 | Soybean | nucleus | 37.05 | 26.41 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 29.5 | 25.95 |
| CDY31048 | Canola | nucleus | 29.14 | 25.8 |
| CDX67710 | Canola | nucleus | 29.86 | 25.78 |
| CDX88966 | Canola | nucleus | 30.22 | 25.3 |
| CDX77488 | Canola | nucleus | 29.86 | 25.23 |
| CDY56230 | Canola | nucleus | 30.22 | 25.23 |
| Zm00001d051569_P001 | Maize | nucleus | 30.94 | 25.15 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 31.65 | 25.07 |
| EES05656 | Sorghum | nucleus | 32.37 | 25.07 |
| CDX85122 | Canola | nucleus | 29.5 | 24.77 |
| KRH24463 | Soybean | nucleus | 35.97 | 24.75 |
| KRH29448 | Soybean | nucleus | 37.41 | 24.7 |
| CDY20659 | Canola | nucleus | 29.5 | 24.62 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 31.3 | 24.58 |
| Os02t0705500-01 | Rice | nucleus | 31.65 | 24.38 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 31.65 | 24.38 |
| CDX87255 | Canola | nucleus, plastid | 24.46 | 24.29 |
| CDY61581 | Canola | plastid | 15.83 | 24.04 |
| KRH60839 | Soybean | nucleus | 37.05 | 23.95 |
| CDY06074 | Canola | nucleus | 30.58 | 23.88 |
| CDX71994 | Canola | nucleus | 30.94 | 23.82 |
| CDY22605 | Canola | nucleus | 29.86 | 23.51 |
| Zm00001d017778_P001 | Maize | nucleus | 32.37 | 23.44 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 37.77 | 23.18 |
| CDY63738 | Canola | nucleus | 28.42 | 23.1 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 32.01 | 23.06 |
| CDY53834 | Canola | nucleus | 28.78 | 23.05 |
| CDY47665 | Canola | cytosol | 20.86 | 22.57 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 11.15 | 22.46 |
| Solyc01g109700.2.1 | Tomato | nucleus | 34.89 | 22.35 |
| PGSC0003DMT400001888 | Potato | nucleus | 35.25 | 22.17 |
| CDY61420 | Canola | extracellular | 10.79 | 22.06 |
| GSMUA_Achr10P... | Banana | nucleus | 30.58 | 21.14 |
| CDY51061 | Canola | nucleus | 32.37 | 20.79 |
| CDY57925 | Canola | nucleus | 28.78 | 20.1 |
| CDY35923 | Canola | nucleus, plastid | 32.01 | 19.87 |
| CDX86297 | Canola | nucleus | 34.53 | 19.59 |
| CDX85347 | Canola | nucleus | 34.53 | 19.55 |
| CDY28061 | Canola | nucleus | 31.3 | 19.21 |
| CDY45835 | Canola | nucleus | 30.22 | 18.54 |
| CDX95974 | Canola | nucleus | 30.94 | 17.95 |
| CDX81575 | Canola | nucleus | 30.58 | 17.89 |
| CDY33568 | Canola | nucleus | 30.94 | 17.84 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078FWV9 | UniProt:A0A078FWV9 | EnsemblPlants:CDY17466 |
| ProteinID:CDY17466 | ProteinID:CDY17466.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00095641001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE8FB2 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g65970DBnaC03g65970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWV9]
Coordinates
chrLK032074:+:12081..13275
Molecular Weight (calculated)
31661.9 Da
IEP (calculated)
6.949
GRAVY (calculated)
-0.548
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMMMNGAT EAELLLNCTD MSFLQLQRDH LRYHHHPGFF SNSSTINGGE SDGFLATTGL NLPDIYREKT TESDAILSMS PENITTSATF VSENFKKRKL
101: DDVVTETKVC DEKKMMMRNK AKKEENNFSN DSSKVRKGSQ KRDYIHVRAR RGQATDSHSI AERARREKIS ERMKYLQALV PGCDKFTNKA GMLDEIINYV
201: LSLQTQVEFL SMKLAALSSR LDEMVNSVYP HEMVSTGYLH FNPMQQVITS SDPPLQCFNN GQAPSMWEPD VQNLYIAL
101: DDVVTETKVC DEKKMMMRNK AKKEENNFSN DSSKVRKGSQ KRDYIHVRAR RGQATDSHSI AERARREKIS ERMKYLQALV PGCDKFTNKA GMLDEIINYV
201: LSLQTQVEFL SMKLAALSSR LDEMVNSVYP HEMVSTGYLH FNPMQQVITS SDPPLQCFNN GQAPSMWEPD VQNLYIAL
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.