CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY30379
CDY53659
CDY55504
CDY56346

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48560.1	CDY30379	AT2G43060.1	21798944
AT5G48560.1	CDY53659	AT2G43060.1	21798944
AT5G48560.1	CDY55504	AT2G43060.1	21798944
AT5G48560.1	CDY56346	AT2G43060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037478.1-P	Field mustard	nucleus	99.39	99.39
CDX85347	Canola	nucleus	98.57	98.37
CDX86296	Canola	nucleus	50.2	90.77
CDY51061	Canola	nucleus	74.29	84.06
AT5G48560.1	Thale cress	nucleus	81.22	79.92
CDY05670	Canola	nucleus	42.04	79.84
CDY28061	Canola	nucleus	54.9	59.38
CDY35923	Canola	nucleus, plastid	53.47	58.48
CDY25986	Canola	plastid	19.59	44.04
CDY72360	Canola	cytosol	13.47	44.0
KRG99606	Soybean	nucleus	50.0	42.24
CDY18099	Canola	nucleus	18.57	40.81
CDY08308	Canola	nucleus	24.29	40.75
KRH46615	Soybean	nucleus	48.57	40.61
KRH07417	Soybean	nucleus, plastid	48.37	40.24
CDY64034	Canola	nucleus	25.1	40.07
CDY33821	Canola	mitochondrion, plastid	15.92	39.8
KRH66158	Soybean	nucleus, plastid	47.76	39.39
CDY45806	Canola	nucleus	22.86	38.23
CDX77488	Canola	nucleus	25.51	37.99
CDY56230	Canola	nucleus	25.71	37.84
CDX84885	Canola	nucleus	22.86	37.71
CDY37979	Canola	nucleus	20.41	37.59
CDX85122	Canola	nucleus	25.31	37.46
CDX93427	Canola	nucleus	20.41	37.31
CDX76288	Canola	nucleus	18.98	37.2
CDY17466	Canola	nucleus	19.59	34.53
CDY61581	Canola	plastid	12.86	34.43
CDX87255	Canola	nucleus, plastid	19.39	33.93
CDX98249	Canola	nucleus	19.39	33.93
CDY31048	Canola	nucleus	20.41	31.85
CDX75440	Canola	nucleus	21.22	31.61
CDX67710	Canola	nucleus	20.41	31.06
CDY20659	Canola	nucleus	21.02	30.93
CDX69067	Canola	nucleus	21.43	30.88
CDX79883	Canola	nucleus	18.98	30.79
CDX88966	Canola	nucleus	20.41	30.12
CDY53497	Canola	nucleus	18.98	30.1
CDY63738	Canola	nucleus	20.61	29.53
CDX71994	Canola	nucleus	21.43	29.09
CDY06074	Canola	nucleus	21.02	28.93
CDY22605	Canola	nucleus	20.82	28.9
CDY53834	Canola	nucleus	20.41	28.82
CDY61420	Canola	extracellular	7.96	28.68
CDY47666	Canola	endoplasmic reticulum, extracellular	7.76	27.54
CDY45835	Canola	nucleus	25.31	27.37
CDY47665	Canola	cytosol	14.29	27.24
CDX81575	Canola	nucleus	25.92	26.74
CDY33568	Canola	nucleus	26.12	26.56
CDX95974	Canola	nucleus	25.71	26.3
CDY57925	Canola	nucleus	20.82	25.63

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078DB61	EnsemblPlants:CDX86297	ProteinID:CDX86297
ProteinID:CDX86297.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00144410001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE1F67	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA06g30140D

Coordinates

chrLK031845:-:811943..814589

Molecular Weight (calculated)

53435.9 Da

IEP (calculated)

7.364

GRAVY (calculated)

-0.668

Length

490 amino acids

Sequence
(BLAST)

001: MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWGLMDPNL ARNSPPQDCF MWEKSTEQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFI IRELIGKLGN
101: IGNTSGDIYG APMNGNVSRS ASCYATPMSS PPPMMNRTAP LTEFSGDPGF AERAAKFSCF GSRSFNGRTN SGIPVNNGKI VNSGKLTRVS STPALKALAS
201: PEFASASRPM IPAGDSPPKL PGEFSRKRKS VSKGKSKDNP LPAASPSPSF SKTAERKEVS EEKGGKRRRE DEGEEEEGNK GGNDTKPPEP PKDYIHVRAR
301: RGQATDSHSL AERVRREKIG ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDAMISSSG SRVHESGLRL
401: ESLSHHNYNN NSQLHTNVSS NNMMLHSPMK SLEPSALARG FTHLPTLTQF TDTISQYQMF SEEDLQSIVG MGVAHNPNHE SQSQNMKIEL

Best Arabidopsis Sequence Match ( AT5G48560.1 )
(BLAST)

001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL

Arabidopsis Description

BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.