Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88966 | Canola | nucleus | 78.6 | 60.84 |
| CDX98249 | Canola | nucleus | 62.26 | 57.14 |
| CDX67710 | Canola | nucleus | 66.54 | 53.11 |
| CDY06074 | Canola | nucleus | 64.98 | 46.91 |
| CDX71994 | Canola | nucleus | 65.76 | 46.81 |
| AT3G57800.1 | Thale cress | nucleus | 72.76 | 43.9 |
| CDX79883 | Canola | nucleus | 50.19 | 42.72 |
| CDY53497 | Canola | nucleus | 50.97 | 42.39 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 45.91 | 32.42 |
| KRG95332 | Soybean | nucleus | 44.36 | 31.15 |
| KRH71879 | Soybean | nucleus | 42.02 | 30.51 |
| KRH33022 | Soybean | nucleus | 41.25 | 29.69 |
| PGSC0003DMT400021130 | Potato | nucleus | 40.86 | 29.17 |
| KRH67006 | Soybean | nucleus | 45.14 | 29.0 |
| Solyc10g079070.1.1 | Tomato | nucleus | 39.69 | 28.25 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 33.85 | 27.71 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 41.63 | 27.65 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 33.85 | 27.53 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 38.91 | 27.4 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 38.13 | 26.78 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 29.96 | 26.55 |
| CDY18099 | Canola | nucleus | 21.01 | 24.22 |
| Zm00001d046759_P001 | Maize | plastid | 32.68 | 23.6 |
| Zm00001d036807_P001 | Maize | nucleus | 32.68 | 22.7 |
| CDX76288 | Canola | nucleus | 21.4 | 22.0 |
| HORVU7Hr1G094690.1 | Barley | plastid | 21.01 | 21.86 |
| OQU76702 | Sorghum | nucleus | 33.85 | 21.22 |
| CDY17466 | Canola | nucleus | 22.57 | 20.86 |
| CDY37979 | Canola | nucleus | 21.4 | 20.68 |
| CDY08308 | Canola | nucleus | 23.35 | 20.55 |
| CDX93427 | Canola | nucleus | 21.01 | 20.15 |
| CDY64034 | Canola | nucleus | 22.96 | 19.22 |
| CDY45806 | Canola | nucleus | 21.4 | 18.77 |
| CDX87255 | Canola | nucleus, plastid | 20.23 | 18.57 |
| CDX84885 | Canola | nucleus | 21.01 | 18.18 |
| CDX75440 | Canola | nucleus | 22.96 | 17.93 |
| CDX69067 | Canola | nucleus | 23.35 | 17.65 |
| CDX77488 | Canola | nucleus | 21.4 | 16.72 |
| CDY05670 | Canola | nucleus | 16.73 | 16.67 |
| CDX85122 | Canola | nucleus | 21.4 | 16.62 |
| CDY56230 | Canola | nucleus | 21.4 | 16.52 |
| CDX86296 | Canola | nucleus | 17.12 | 16.24 |
| CDY51061 | Canola | nucleus | 27.24 | 16.17 |
| CDY28061 | Canola | nucleus | 28.4 | 16.11 |
| CDY35923 | Canola | nucleus, plastid | 28.02 | 16.07 |
| CDY25986 | Canola | plastid | 13.23 | 15.6 |
| CDY22605 | Canola | nucleus | 20.62 | 15.01 |
| CDY31048 | Canola | nucleus | 18.29 | 14.97 |
| CDY63738 | Canola | nucleus | 19.84 | 14.91 |
| CDY45835 | Canola | nucleus | 25.29 | 14.35 |
| CDX86297 | Canola | nucleus | 27.24 | 14.29 |
| CDY53834 | Canola | nucleus | 19.07 | 14.12 |
| CDY20659 | Canola | nucleus | 18.29 | 14.11 |
| CDX85347 | Canola | nucleus | 26.85 | 14.05 |
| CDY33821 | Canola | mitochondrion, plastid | 10.51 | 13.78 |
| CDX81575 | Canola | nucleus | 24.9 | 13.47 |
| CDX95974 | Canola | nucleus | 24.9 | 13.36 |
| CDY33568 | Canola | nucleus | 24.9 | 13.28 |
| CDY57925 | Canola | nucleus | 19.84 | 12.81 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 6.23 | 10.39 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 4.67 | 8.7 |
| CDY61581 | Canola | plastid | 5.45 | 7.65 |
| CDY72360 | Canola | cytosol | 4.28 | 7.33 |
| Os09t0474051-01 | Rice | plastid | 15.56 | 6.84 |
| CDY61420 | Canola | extracellular | 2.72 | 5.15 |
Protein Annotations
| EnsemblPlants:CDY47665 | EnsemblPlantsGene:GSBRNA2T00087898001 | Gene3D:4.10.280.10 | GO:A0A078I9P0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY47665 | ProteinID:CDY47665.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EEE7ED | UniProt:A0A078I9P0 | MapMan:15.5.32 | : |
Description
BnaC04g24020DBnaC04g24020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9P0]
Coordinates
chrLK032728:+:91099..92976
Molecular Weight (calculated)
28382.4 Da
IEP (calculated)
8.877
GRAVY (calculated)
-0.740
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGRFGAR SGNGVPFREV TGLESLHLGG GDEFRQMVLP ENGGGFTALL ELPPTRAVEL LHSSSSSSSQ ATLHSVGTLT FPSNPILMER AARFSVIATE
101: QNPNGNISGE TTTSSVPSNE HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVNSSTKK KSKSSEENEK LPYVHVRARR GQATDSHSLA ERARREKINA
201: RMKLLQELVP GCDKIHPKRD RFWWKDEDQS VLWGPSNCKL SLEVGNMDVT LPSRQLI
101: QNPNGNISGE TTTSSVPSNE HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVNSSTKK KSKSSEENEK LPYVHVRARR GQATDSHSLA ERARREKINA
201: RMKLLQELVP GCDKIHPKRD RFWWKDEDQS VLWGPSNCKL SLEVGNMDVT LPSRQLI
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKVYSGHCI GSG
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKVYSGHCI GSG
Arabidopsis Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.