Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67710 | Canola | nucleus | 63.85 | 84.47 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 27.23 | 84.06 |
| Bra003300.1-P | Field mustard | nucleus | 63.38 | 83.85 |
| CDX88966 | Canola | nucleus | 63.62 | 81.63 |
| CDX71994 | Canola | nucleus | 69.01 | 81.44 |
| Bra007358.1-P | Field mustard | nucleus | 67.84 | 80.73 |
| Bra014603.1-P | Field mustard | nucleus | 65.49 | 80.64 |
| CDY06074 | Canola | nucleus | 67.37 | 80.62 |
| CDX98249 | Canola | nucleus | 52.58 | 80.0 |
| AT2G42300.1 | Thale cress | nucleus | 59.86 | 77.98 |
| CDY47665 | Canola | cytosol | 43.9 | 72.76 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 47.65 | 55.77 |
| KRG95332 | Soybean | nucleus | 45.07 | 52.46 |
| KRH71879 | Soybean | nucleus | 42.49 | 51.13 |
| KRH33022 | Soybean | nucleus | 42.02 | 50.14 |
| PGSC0003DMT400021130 | Potato | nucleus | 40.14 | 47.5 |
| KRH67006 | Soybean | nucleus | 44.37 | 47.25 |
| Solyc10g079070.1.1 | Tomato | nucleus | 39.44 | 46.54 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 32.63 | 44.27 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 32.63 | 43.99 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 37.09 | 43.29 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 39.2 | 43.15 |
| HORVU7Hr1G094690.1 | Barley | plastid | 24.65 | 42.51 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 15.26 | 42.21 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 34.98 | 40.71 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 27.0 | 39.66 |
| Zm00001d046759_P001 | Maize | plastid | 31.22 | 37.36 |
| Zm00001d036807_P001 | Maize | nucleus | 31.46 | 36.22 |
| OQU76702 | Sorghum | nucleus | 32.39 | 33.66 |
| AT4G34530.1 | Thale cress | nucleus | 22.54 | 28.66 |
| AT5G62610.2 | Thale cress | nucleus | 18.54 | 28.11 |
| AT1G26260.1 | Thale cress | nucleus | 24.41 | 26.67 |
| AT3G23690.1 | Thale cress | nucleus | 22.54 | 25.88 |
| AT5G50915.2 | Thale cress | nucleus | 17.37 | 25.87 |
| AT1G10120.1 | Thale cress | nucleus | 21.83 | 25.41 |
| AT3G07340.1 | Thale cress | nucleus | 24.41 | 22.81 |
| AT1G59640.2 | Thale cress | nucleus | 18.31 | 22.74 |
| AT1G68920.1 | Thale cress | nucleus | 25.59 | 22.43 |
| AT5G48560.1 | Thale cress | nucleus | 24.88 | 21.29 |
| Os09t0474051-01 | Rice | plastid | 13.38 | 9.74 |
Protein Annotations
| MapMan:15.5.32 | EntrezGene:825530 | UniProt:A0A178VB92 | ProteinID:AEE79702.1 | ProteinID:AEE79703.1 | EMBL:AF488593 |
| ArrayExpress:AT3G57800 | EnsemblPlantsGene:AT3G57800 | RefSeq:AT3G57800 | TAIR:AT3G57800 | RefSeq:AT3G57800-TAIR-G | EnsemblPlants:AT3G57800.1 |
| TAIR:AT3G57800.1 | EMBL:AY085849 | EMBL:AY139773 | Unigene:At.34797 | EMBL:BT003037 | ProteinID:CAB41175.1 |
| ProteinID:CAB67608.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_567057.2 |
| RefSeq:NP_850745.1 | ProteinID:OAP02253.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | UniProt:Q3EAI1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00001970AB | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
Coordinates
chr3:-:21407789..21411612
Molecular Weight (calculated)
46578.1 Da
IEP (calculated)
6.295
GRAVY (calculated)
-0.479
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKGTDFGGKI KIKVCFGVHL LMISGKKVAI FLWKVSCEDL IDCSFSPPRI QGTALVLDEI
301: INHVQSLQRQ VEMLSMRLAA VNPRIDFNLD TILASENGSL MDGSFNAAPM QLAWPQQAIE TEQSFHHRQL QQPPTQQWPF DGLNQPVWGR EEDQAHGNDN
401: SNLMAVSENV MVASANLHPN QVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKGTDFGGKI KIKVCFGVHL LMISGKKVAI FLWKVSCEDL IDCSFSPPRI QGTALVLDEI
301: INHVQSLQRQ VEMLSMRLAA VNPRIDFNLD TILASENGSL MDGSFNAAPM QLAWPQQAIE TEQSFHHRQL QQPPTQQWPF DGLNQPVWGR EEDQAHGNDN
401: SNLMAVSENV MVASANLHPN QVKMEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.