Factsheet for Bra003300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67710	Canola	nucleus	99.38	99.38
Bra007358.1-P	Field mustard	nucleus	81.06	72.91
Bra014603.1-P	Field mustard	nucleus	77.64	72.25
Bra004679.1-P	Field mustard	nucleus	59.63	63.58
AT3G57800.1	Thale cress	nucleus	83.85	63.38
VIT_08s0007g07870.t01	Wine grape	nucleus	54.35	48.08
KRH71879	Soybean	nucleus	49.38	44.92
KRG95332	Soybean	nucleus	50.31	44.26
KRH33022	Soybean	nucleus	48.76	43.98
TraesCS7B01G303300.1	Wheat	nucleus	41.93	42.99
TraesCS7D01G397300.1	Wheat	nucleus, plastid	41.61	42.41
PGSC0003DMT400021130	Potato	nucleus	47.2	42.22
Solyc10g079070.1.1	Tomato	nucleus	45.96	41.0
KRH67006	Soybean	nucleus	50.31	40.5
HORVU7Hr1G094690.1	Barley	plastid	30.75	40.08
TraesCS7A01G403900.1	Wheat	cytosol	18.94	39.61
GSMUA_Achr1P19610_001	Banana	nucleus	44.1	38.9
GSMUA_Achr7P06330_001	Banana	nucleus	43.79	38.52
GSMUA_Achr4P19330_001	Banana	nucleus	46.27	38.5
GSMUA_Achr9P22300_001	Banana	nucleus	32.92	36.55
Zm00001d046759_P001	Maize	plastid	40.37	36.52
Zm00001d036807_P001	Maize	nucleus	40.68	35.41
OQU76702	Sorghum	nucleus	41.61	32.68
Bra037059.1-P	Field mustard	nucleus	27.64	31.12
Bra011540.1-P	Field mustard	nucleus	31.68	31.1
Bra034636.1-P	Field mustard	nucleus	26.4	30.25
Bra019935.1-P	Field mustard	nucleus	24.53	29.48
Bra022753.1-P	Field mustard	nucleus	25.78	27.95
Bra038336.1-P	Field mustard	plastid	30.12	26.58
Bra028335.1-P	Field mustard	nucleus	27.33	26.51
Bra014972.1-P	Field mustard	nucleus	26.4	25.84
Bra031700.1-P	Field mustard	nucleus	25.47	25.08
Bra018461.1-P	Field mustard	nucleus	24.22	24.22
Bra029640.1-P	Field mustard	nucleus, plastid	31.99	23.2
Bra019962.1-P	Field mustard	nucleus	24.22	23.01
Bra020691.1-P	Field mustard	nucleus	31.06	22.47
Bra004348.1-P	Field mustard	nucleus	32.61	22.06
Bra037478.1-P	Field mustard	nucleus	31.06	20.41
Os09t0474051-01	Rice	plastid	15.84	8.72

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra003300	EnsemblPlants:Bra003300.1	EnsemblPlants:Bra003300.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CGG7	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF112	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025415B9	InterPro:bHLH_dom	SEG:seg

Description

AT2G42300 (E=2e-082) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:-:12474993..12477934

Molecular Weight (calculated)

35525.4 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.790

Length

322 amino acids

Sequence
(BLAST)

001: MDLTGEFGAR SDRGERCREV TGLESLHLGD EFRQLALPPE NTGGVTALLE LPPTQAVNLL RFTDSPSSSS QAAAVTGIAP TPPLHSYGTL TFPSNSLLME
101: RAARFSTEHQ QNGNVSGTSS VPSNSSVKTE PAETDSSQAV NSRSGKRKDS DKKAKSSTKK KKNKSSEENE KLPYVHVRAR RGQATDSHSL AERARREKIN
201: ARMKLLQELV PGCDKIQGTA LVLDEIINHV QSLQRQVEML SMRLASVNPR VDFNLDTILA SENGSLMDGS FNGTAMQVAW PHQVTETEQS YHHRQLQQPQ
301: QWPFDGLNQR AWGKEEDQDH GQ

Best Arabidopsis Sequence Match ( AT3G57800.2 )
(BLAST)

001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL

Arabidopsis Description

BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.