Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P19330_001 | Banana | nucleus | 76.44 | 72.09 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 63.84 | 63.66 |
| Os06t0613500-01 | Rice | cytosol, nucleus | 27.4 | 56.18 |
| GSMUA_Achr8P09170_001 | Banana | nucleus | 16.71 | 50.41 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 43.29 | 50.32 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 43.56 | 50.32 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 50.14 | 50.27 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 21.1 | 50.0 |
| CDX98249 | Canola | nucleus | 36.44 | 47.5 |
| Bra004679.1-P | Field mustard | nucleus | 38.9 | 47.02 |
| CDX79883 | Canola | nucleus | 38.63 | 46.69 |
| CDY53497 | Canola | nucleus | 38.9 | 45.95 |
| KRG95332 | Soybean | nucleus | 46.03 | 45.9 |
| HORVU7Hr1G094690.1 | Barley | plastid | 30.96 | 45.75 |
| AT2G42300.1 | Thale cress | nucleus | 40.82 | 45.57 |
| Zm00001d046759_P001 | Maize | plastid | 44.38 | 45.51 |
| CDX88966 | Canola | nucleus | 41.1 | 45.18 |
| PGSC0003DMT400021130 | Potato | nucleus | 44.11 | 44.72 |
| CDX67710 | Canola | nucleus | 39.45 | 44.72 |
| KRH71879 | Soybean | nucleus | 43.29 | 44.63 |
| KRH33022 | Soybean | nucleus | 43.56 | 44.54 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 35.07 | 44.14 |
| Bra003300.1-P | Field mustard | nucleus | 38.9 | 44.1 |
| Solyc10g079070.1.1 | Tomato | nucleus | 43.56 | 44.04 |
| Bra014603.1-P | Field mustard | nucleus | 41.64 | 43.93 |
| Zm00001d036807_P001 | Maize | nucleus | 44.38 | 43.78 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 16.16 | 42.75 |
| Bra007358.1-P | Field mustard | nucleus | 41.92 | 42.74 |
| CDY06074 | Canola | nucleus | 41.64 | 42.7 |
| CDX71994 | Canola | nucleus | 41.64 | 42.11 |
| KRH67006 | Soybean | nucleus | 44.93 | 41.0 |
| OQU76702 | Sorghum | nucleus | 46.03 | 40.98 |
| GSMUA_Achr6P16480_001 | Banana | nucleus | 18.08 | 40.24 |
| CDY47665 | Canola | cytosol | 27.4 | 38.91 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 18.9 | 37.5 |
| AT3G57800.1 | Thale cress | nucleus | 43.29 | 37.09 |
| GSMUA_Achr10P... | Banana | nucleus | 17.26 | 34.24 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 20.55 | 33.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.37 | 32.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.56 | 30.39 |
| GSMUA_Achr6P36210_001 | Banana | nucleus | 21.92 | 29.09 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 20.27 | 28.68 |
| GSMUA_Achr10P... | Banana | nucleus | 21.64 | 28.52 |
| GSMUA_Achr9P01040_001 | Banana | nucleus | 21.92 | 28.37 |
| GSMUA_Achr2P09660_001 | Banana | nucleus | 24.38 | 28.08 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 23.84 | 27.53 |
| GSMUA_Achr9P28060_001 | Banana | nucleus | 22.47 | 26.8 |
| GSMUA_Achr9P07330_001 | Banana | nucleus | 25.75 | 25.97 |
| GSMUA_Achr9P09770_001 | Banana | nucleus | 22.47 | 25.71 |
| GSMUA_Achr8P24490_001 | Banana | nucleus | 28.22 | 24.88 |
| GSMUA_Achr1P09570_001 | Banana | nucleus | 23.29 | 24.5 |
| GSMUA_Achr3P02490_001 | Banana | nucleus | 28.22 | 24.41 |
| GSMUA_Achr9P18510_001 | Banana | nucleus | 20.82 | 24.36 |
| GSMUA_Achr3P12130_001 | Banana | nucleus | 25.21 | 24.15 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 21.64 | 23.51 |
| GSMUA_Achr6P27780_001 | Banana | nucleus | 32.33 | 22.61 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 22.47 | 22.34 |
| GSMUA_Achr10P... | Banana | nucleus | 24.38 | 22.14 |
| GSMUA_Achr2P21280_001 | Banana | nucleus | 29.86 | 21.67 |
| GSMUA_Achr1P19120_001 | Banana | nucleus | 25.21 | 21.45 |
| GSMUA_Achr3P13490_001 | Banana | nucleus | 25.21 | 21.1 |
| GSMUA_Achr3P10600_001 | Banana | nucleus | 26.03 | 20.61 |
| GSMUA_Achr2P06090_001 | Banana | nucleus | 26.85 | 20.5 |
| GSMUA_Achr3P17290_001 | Banana | plastid | 31.23 | 20.0 |
| GSMUA_Achr2P21460_001 | Banana | nucleus | 20.82 | 19.64 |
| GSMUA_Achr10P... | Banana | nucleus | 22.47 | 19.39 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 24.11 | 19.26 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 22.47 | 18.55 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 24.66 | 18.44 |
| GSMUA_Achr10P... | Banana | mitochondrion | 27.67 | 15.35 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr1G19610_001 | EnsemblPlants:GSMUA_Achr1P19610_001 | EnsemblPlants:GSMUA_Achr1T19610_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0S1B9 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294A14E | InterPro:bHLH_dom | SEG:seg |
Description
Putative Transcription factor bHLH48 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19610_001]
Coordinates
chr1:-:14681571..14686098
Molecular Weight (calculated)
38265.9 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.378
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRGSSGVG SGNSGTYTPE IAESLRFEEE IQSLIDPSFD ASSAAGGSFT ALLGLPANQA VELLHHPGPG EPPASAATDT LRLPFGCSST FVERAARFSV
101: FATDDSPASS SGGGLSPGLK AEPPDSDSPP TLPAPAGKPR RPSKRKECEK SKAVAKKSKS AEENTSAAKP AAEENTSGDK LPYVHVRARR GQATDSHSLA
201: ERARREKINA RMKLLQELVP GCSKITGTAL VLDEIINHVQ SLQRQVEFLS MKLAAVNPRI DFSGLDHILS AECGPLAVAS GCGGGASDPA MWASDTAAST
301: GGIRRMPAPP QIWHLDVVHP QQSSTVWENN GVAHPHFLLS PATSLVGYDP ASSVPLNSNR LKTEL
101: FATDDSPASS SGGGLSPGLK AEPPDSDSPP TLPAPAGKPR RPSKRKECEK SKAVAKKSKS AEENTSAAKP AAEENTSGDK LPYVHVRARR GQATDSHSLA
201: ERARREKINA RMKLLQELVP GCSKITGTAL VLDEIINHVQ SLQRQVEFLS MKLAAVNPRI DFSGLDHILS AECGPLAVAS GCGGGASDPA MWASDTAAST
301: GGIRRMPAPP QIWHLDVVHP QQSSTVWENN GVAHPHFLLS PATSLVGYDP ASSVPLNSNR LKTEL
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
Arabidopsis Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.