Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P19610_001 | Banana | nucleus | 72.09 | 76.44 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 65.12 | 68.85 |
| Os06t0613500-01 | Rice | cytosol, nucleus | 27.13 | 58.99 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 43.15 | 53.18 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 20.93 | 52.6 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 42.89 | 52.53 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 48.58 | 51.65 |
| GSMUA_Achr8P09170_001 | Banana | nucleus | 15.76 | 50.41 |
| HORVU7Hr1G094690.1 | Barley | plastid | 31.78 | 49.8 |
| CDX98249 | Canola | nucleus | 35.92 | 49.64 |
| Bra004679.1-P | Field mustard | nucleus | 38.24 | 49.01 |
| CDX79883 | Canola | nucleus | 37.73 | 48.34 |
| AT2G42300.1 | Thale cress | nucleus | 40.83 | 48.32 |
| Zm00001d046759_P001 | Maize | plastid | 44.19 | 48.03 |
| CDY53497 | Canola | nucleus | 38.24 | 47.9 |
| KRG95332 | Soybean | nucleus | 45.22 | 47.81 |
| CDX88966 | Canola | nucleus | 40.83 | 47.59 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 35.66 | 47.59 |
| Bra007358.1-P | Field mustard | nucleus | 43.93 | 47.49 |
| CDY06074 | Canola | nucleus | 43.41 | 47.19 |
| CDX67710 | Canola | nucleus | 39.02 | 46.89 |
| PGSC0003DMT400021130 | Potato | nucleus | 43.41 | 46.67 |
| CDX71994 | Canola | nucleus | 43.41 | 46.54 |
| Zm00001d036807_P001 | Maize | nucleus | 44.44 | 46.49 |
| Bra003300.1-P | Field mustard | nucleus | 38.5 | 46.27 |
| Solyc10g079070.1.1 | Tomato | nucleus | 43.15 | 46.26 |
| Bra014603.1-P | Field mustard | nucleus | 41.34 | 46.24 |
| KRH33022 | Soybean | nucleus | 42.38 | 45.94 |
| KRH71879 | Soybean | nucleus | 41.6 | 45.48 |
| KRH67006 | Soybean | nucleus | 44.96 | 43.5 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 15.5 | 43.48 |
| OQU76702 | Sorghum | nucleus | 45.99 | 43.41 |
| CDY47665 | Canola | cytosol | 27.65 | 41.63 |
| GSMUA_Achr6P16480_001 | Banana | nucleus | 17.05 | 40.24 |
| AT3G57800.1 | Thale cress | nucleus | 43.15 | 39.2 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 17.83 | 37.5 |
| GSMUA_Achr10P... | Banana | nucleus | 16.54 | 34.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.93 | 33.47 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 19.12 | 32.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.22 | 30.39 |
| GSMUA_Achr2P09660_001 | Banana | nucleus | 23.51 | 28.71 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 19.12 | 28.68 |
| GSMUA_Achr10P... | Banana | nucleus | 20.41 | 28.52 |
| GSMUA_Achr6P36210_001 | Banana | nucleus | 20.16 | 28.36 |
| GSMUA_Achr9P01040_001 | Banana | nucleus | 20.16 | 27.66 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 22.22 | 27.22 |
| GSMUA_Achr9P07330_001 | Banana | nucleus | 24.81 | 26.52 |
| GSMUA_Achr9P28060_001 | Banana | nucleus | 19.9 | 25.16 |
| GSMUA_Achr8P24490_001 | Banana | nucleus | 26.87 | 25.12 |
| GSMUA_Achr9P09770_001 | Banana | nucleus | 20.41 | 24.76 |
| GSMUA_Achr1P09570_001 | Banana | nucleus | 21.96 | 24.5 |
| GSMUA_Achr3P12130_001 | Banana | nucleus | 23.77 | 24.15 |
| GSMUA_Achr9P18510_001 | Banana | nucleus | 19.38 | 24.04 |
| GSMUA_Achr3P02490_001 | Banana | nucleus | 25.32 | 23.22 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 20.16 | 23.21 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 21.19 | 22.34 |
| GSMUA_Achr6P27780_001 | Banana | nucleus | 29.97 | 22.22 |
| GSMUA_Achr10P... | Banana | nucleus | 23.0 | 22.14 |
| GSMUA_Achr1P19120_001 | Banana | nucleus | 24.03 | 21.68 |
| GSMUA_Achr3P13490_001 | Banana | nucleus | 24.29 | 21.56 |
| GSMUA_Achr2P21460_001 | Banana | nucleus | 20.93 | 20.93 |
| GSMUA_Achr2P21280_001 | Banana | nucleus | 27.13 | 20.87 |
| GSMUA_Achr2P06090_001 | Banana | nucleus | 25.58 | 20.71 |
| GSMUA_Achr3P17290_001 | Banana | plastid | 29.72 | 20.18 |
| GSMUA_Achr3P10600_001 | Banana | nucleus | 24.03 | 20.17 |
| GSMUA_Achr10P... | Banana | nucleus | 20.93 | 19.15 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 21.45 | 18.78 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 21.71 | 18.38 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 21.96 | 17.42 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.06 | 14.74 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr4G19330_001 | EnsemblPlants:GSMUA_Achr4P19330_001 | EnsemblPlants:GSMUA_Achr4T19330_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0SQ96 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002954715 | InterPro:bHLH_dom | SEG:seg |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G19330_001]
Coordinates
chr4:+:20361289..20365334
Molecular Weight (calculated)
40774.1 Da
IEP (calculated)
6.955
GRAVY (calculated)
-0.351
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPARCSGVG SGNSGAYTTE IAESLRFEEE IHSIVHPSLD SSPAAGGSFT ALLGLPANQA VELLHETGPS EAPGSAAAPS PTGELWRLRL GEHAAGPLHL
101: PLGCSPTFPS NAALVERAAR FSVFAAEDSP ALSSGGGPSP RLKAEPLDSD SPPLLPIPTE KTQRPAKRKE CEKSKGPAKK SKSAEETTAA AAKETAAENT
201: DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCSKIT GTALVLDEII NHVQSLQRQV EFLSMRLAAV NPRIDFGGLD SFLSAECGPL
301: ATANGRGGVA LDPALWSSHP VTANGARWLP QPQIRHVDVW PTQQSSMAWT RDGPAHPHAL LNPGASLVGY DPASSVLLNS NQLKTEL
101: PLGCSPTFPS NAALVERAAR FSVFAAEDSP ALSSGGGPSP RLKAEPLDSD SPPLLPIPTE KTQRPAKRKE CEKSKGPAKK SKSAEETTAA AAKETAAENT
201: DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCSKIT GTALVLDEII NHVQSLQRQV EFLSMRLAAV NPRIDFGGLD SFLSAECGPL
301: ATANGRGGVA LDPALWSSHP VTANGARWLP QPQIRHVDVW PTQQSSMAWT RDGPAHPHAL LNPGASLVGY DPASSVLLNS NQLKTEL
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.