Factsheet for GSMUA_Achr2P06090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09170_001	Banana	nucleus	13.81	54.55
GSMUA_Achr6P27780_001	Banana	nucleus	53.77	49.23
GSMUA_Achr6P16480_001	Banana	nucleus	15.27	44.51
GSMUA_Achr9P07330_001	Banana	nucleus	32.85	43.37
GSMUA_Achr3P02490_001	Banana	nucleus	38.28	43.36
GSMUA_Achr2P21280_001	Banana	nucleus	44.56	42.35
GSMUA_Achr5P24960_001	Banana	nucleus	15.9	41.3
GSMUA_Achr1P27010_001	Banana	nucleus	18.62	39.38
Solyc09g057710.2.1	Tomato	nucleus	37.87	38.19
GSMUA_Achr10P...	Banana	nucleus	14.64	38.04
GSMUA_AchrUn_...	Banana	nucleus	22.18	37.46
PGSC0003DMT400053639	Potato	nucleus	38.28	37.2
GSMUA_AchrUn_...	Banana	nucleus	18.83	37.19
GSMUA_Achr6P36210_001	Banana	nucleus	20.5	35.64
GSMUA_Achr9P11020_001	Banana	nucleus	18.41	34.11
GSMUA_Achr3P17290_001	Banana	plastid	39.33	32.98
GSMUA_Achr9P01040_001	Banana	nucleus	19.46	32.98
GSMUA_Achr10P...	Banana	nucleus	18.83	32.49
GSMUA_Achr9P28060_001	Banana	nucleus	20.29	31.7
GSMUA_Achr9P18510_001	Banana	nucleus	19.87	30.45
GSMUA_Achr2P09660_001	Banana	nucleus	19.87	29.97
GSMUA_Achr8P24490_001	Banana	nucleus	25.31	29.23
GSMUA_Achr6P09050_001	Banana	nucleus	19.25	29.11
GSMUA_Achr7P01750_001	Banana	nucleus	19.67	27.98
GSMUA_Achr10P...	Banana	nucleus	24.06	27.19
GSMUA_Achr7P22770_001	Banana	nucleus	25.1	27.15
GSMUA_Achr10P...	Banana	mitochondrion	37.24	27.05
GSMUA_Achr3P12130_001	Banana	nucleus	21.55	27.03
GSMUA_Achr9P22300_001	Banana	nucleus	16.32	26.9
GSMUA_Achr1P19610_001	Banana	nucleus	20.5	26.85
GSMUA_Achr1P09570_001	Banana	nucleus	19.25	26.51
GSMUA_Achr7P06330_001	Banana	nucleus	20.08	26.23
GSMUA_Achr10P...	Banana	nucleus	21.97	26.12
GSMUA_Achr9P09770_001	Banana	nucleus	17.36	26.02
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	19.67	25.61
GSMUA_Achr4P19330_001	Banana	nucleus	20.71	25.58
GSMUA_Achr1P19120_001	Banana	nucleus	22.38	24.94
GSMUA_Achr4P16120_001	Banana	nucleus	23.01	24.07
GSMUA_Achr2P21460_001	Banana	nucleus	18.62	23.0
GSMUA_Achr3P10600_001	Banana	nucleus	21.97	22.78
GSMUA_Achr7P02770_001	Banana	nucleus	23.22	22.75
GSMUA_Achr3P13490_001	Banana	nucleus	20.5	22.48

Protein Annotations

EnsemblPlants:GSMUA_Achr2P06090_001	EnsemblPlants:GSMUA_Achr2T06090_001	EnsemblPlantsGene:GSMUA_Achr2G06090_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296B482	UniProt:M0S5K0	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative Transcription factor bHLH62 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06090_001]

Coordinates

chr2:-:10995715..10997906

Molecular Weight (calculated)

51463.0 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.619

Length

478 amino acids

Sequence
(BLAST)

001: MEKERFFGVN WQSPDATTPP EMNSGGAADD RLPPTFLNLG WAQLMHHNVQ SGSSLGSLVS SLSSNPPTVN DSVVIHELFG QLGSVCDAGE FPPTSLYHSA
101: NVSCYSAPLS SPRKLNLFVT DHQQQGRGGV MPSNQMAAAQ FAPSNSDPAK SYDLLRGQFG FPEAGKLSRV SSSQSLKAAD GSQMGVPDDG KRVPVTDPES
201: LEMELRSKFG GRASGASTPD EMGLGNGQDA SSALDTKINA RKRKSKGKEA SFSSSIMNHP MSTEEDNSDA KRCRPAETNG AGKDAAAKPK TEQNGDAGHE
301: QGKENNAKLA EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKITG KALKLDQIIG YVQSLQRQVE FLSTKLATLN PQLDFLPKDQ
401: IYPLDMTSTA FSYAQQPLQS VATINPTSSS LHRPPLDGFA DATSQLGNLW EDDLQYAVRM GFAQSQGTAA FSQSSLAE

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.