Factsheet for Solyc09g057710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053639	Potato	nucleus	91.77	88.41
Solyc03g113560.2.1	Tomato	cytosol	10.55	49.02
Solyc09g097870.2.1	Tomato	nucleus	39.66	43.62
Solyc04g005130.2.1	Tomato	nucleus	20.46	42.73
Os04t0350700-01	Rice	nucleus	23.63	42.59
GSMUA_Achr3P02490_001	Banana	nucleus	35.44	39.81
GSMUA_Achr9P07330_001	Banana	nucleus	29.75	38.95
Solyc06g083170.2.1	Tomato	nucleus	37.76	38.58
Solyc05g006650.2.1	Tomato	nucleus	21.73	37.87
GSMUA_Achr2P06090_001	Banana	nucleus	38.19	37.87
GSMUA_Achr6P27780_001	Banana	nucleus	41.35	37.55
TraesCS2A01G275600.1	Wheat	nucleus	31.65	36.95
TraesCS2B01G293300.1	Wheat	nucleus	32.49	36.75
TraesCS2D01G274600.1	Wheat	nucleus	31.65	36.59
GSMUA_Achr2P21280_001	Banana	nucleus	38.82	36.58
Os11t0442500-00	Rice	nucleus	28.27	35.73
Zm00001d042373_P002	Maize	nucleus	34.81	35.64
Os01t0915600-01	Rice	nucleus	35.87	35.34
Os09t0501600-01	Rice	nucleus	27.22	35.25
Solyc12g098620.1.1	Tomato	nucleus	29.96	35.15
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	22.57	35.08
OQU89735	Sorghum	nucleus	25.95	34.94
EES04098	Sorghum	nucleus	35.02	34.3
Solyc03g034000.2.1	Tomato	nucleus	19.2	34.21
Zm00001d021019_P001	Maize	nucleus	25.53	34.18
TraesCS7B01G152800.1	Wheat	nucleus	27.64	34.03
Zm00001d006065_P002	Maize	nucleus	25.11	34.0
TraesCS7D01G257000.2	Wheat	nucleus	27.64	33.85
Solyc06g072520.1.1	Tomato	nucleus, plastid	20.46	33.56
TraesCS5B01G278600.1	Wheat	nucleus	26.37	33.51
EES15330	Sorghum	nucleus	28.06	33.5
Zm00001d012067_P003	Maize	nucleus	33.76	33.33
TraesCS3A01G421400.1	Wheat	nucleus	30.59	33.18
Os08t0524800-01	Rice	nucleus	28.27	33.09
TraesCS5D01G286300.5	Wheat	nucleus	26.16	33.07
Solyc03g097820.1.1	Tomato	nucleus	23.0	33.03
Zm00001d031561_P002	Maize	nucleus	27.0	32.74
OQU83382	Sorghum	nucleus	29.54	32.56
TraesCS5A01G279200.2	Wheat	nucleus	26.37	32.38
TraesCS3D01G417300.2	Wheat	nucleus	32.49	32.15
TraesCS3B01G457400.1	Wheat	nucleus	32.07	32.07
HORVU7Hr1G052870.23	Barley	nucleus	26.37	31.81
TraesCS7A01G256200.3	Wheat	nucleus	26.16	31.23
Solyc04g077480.2.1	Tomato	nucleus	24.68	30.63
Solyc01g010130.2.1	Tomato	nucleus	33.54	29.61
GSMUA_Achr3P17290_001	Banana	plastid	35.44	29.47
HORVU5Hr1G075430.5	Barley	nucleus, plastid	26.16	29.11
Solyc10g079070.1.1	Tomato	nucleus	22.15	29.09
Solyc05g010610.2.1	Tomato	nucleus	31.43	28.82
Zm00001d007311_P001	Maize	nucleus	27.64	28.42
Zm00001d049158_P001	Maize	nucleus	26.58	28.38
GSMUA_Achr10P...	Banana	nucleus	25.32	28.37
Solyc01g109700.2.1	Tomato	nucleus	25.74	28.11
GSMUA_Achr7P22770_001	Banana	nucleus	25.32	27.15
Solyc04g005220.1.1	Tomato	nucleus	21.73	24.58
GSMUA_Achr10P...	Banana	mitochondrion	33.76	24.32
HORVU3Hr1G093310.2	Barley	nucleus, plasma membrane, plastid	32.07	23.9
GSMUA_Achr4P16120_001	Banana	nucleus	22.15	22.98
GSMUA_Achr7P02770_001	Banana	nucleus	23.42	22.75

Protein Annotations

EnsemblPlants:Solyc09g057710.2.1	EnsemblPlantsGene:Solyc09g057710.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000276B371	UniProt:K4CTG1	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

No Description!

Coordinates

chr9:-:50228543..50230928

Molecular Weight (calculated)

52195.3 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.777

Length

474 amino acids

Sequence
(BLAST)

001: MEKDYFINGG IPNPALQFEP TMSFPSWNPL HSGQSLFNPN WDHSTPQFDS TLNSIVSSSP AELIGKLGTV CSSPQPILHN NSYSRPMMGK DNIPNLGSSL
101: PPPLPADPGF AQRAAKFSCF GSRSFNGRTS PLGLNYTELS HRSAQTLGNG KLPRVSSSPS LKQGGSPLQL KNSGQTRMEM MSNNSNESVS EPSGETASKL
201: PTELNSSSRK RKTVSRGKTK EDSPTEGVNG NRGSEADDNA RAKRCKQVES NGIENGRVHM EESKDDETQK QVMEYQKPTE PPKDYIHVRA RRGQATDSHS
301: LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLATVNP NLDFPLSKDI CQPNGSVAHP VFPIDKTSSS YQQGRSDIPN
401: GALSQCSVDT SDNSLCRSLG MQLPPLDGFA EYLNQFPEDD LQSFVQMGFT QNPNKDMTLQ SQGPHQTSHM KIEM

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.