Factsheet for TraesCS5B01G278600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G286300.5	Wheat	nucleus	96.25	95.73
TraesCS5A01G279200.2	Wheat	nucleus	98.12	94.82
HORVU5Hr1G075430.5	Barley	nucleus, plastid	93.3	81.69
Os09t0501600-01	Rice	nucleus	65.68	66.94
OQU89735	Sorghum	nucleus	61.39	65.06
Zm00001d021019_P001	Maize	nucleus	60.59	63.84
Zm00001d006065_P002	Maize	nucleus	56.3	60.0
TraesCS7B01G152800.1	Wheat	nucleus	54.16	52.47
TraesCS5B01G457600.1	Wheat	nucleus, plastid	21.45	31.5
TraesCS4B01G059000.1	Wheat	nucleus	25.2	29.1
TraesCS5B01G292100.1	Wheat	nucleus	20.91	28.26
TraesCS5B01G248600.1	Wheat	nucleus	30.83	27.12
TraesCS6B01G300400.1	Wheat	nucleus	25.47	27.07
TraesCS7B01G161700.3	Wheat	nucleus, plastid	23.86	26.57
Solyc09g057710.2.1	Tomato	nucleus	33.51	26.37
TraesCS7B01G303300.1	Wheat	nucleus	21.18	25.16
PGSC0003DMT400053639	Potato	nucleus	32.71	24.8
TraesCS2B01G293300.1	Wheat	nucleus	26.27	23.39
TraesCS3B01G457400.1	Wheat	nucleus	29.49	23.21
GSMUA_Achr10P...	Banana	nucleus	24.93	21.99
TraesCS7B01G118800.1	Wheat	nucleus	25.47	21.59
GSMUA_Achr7P22770_001	Banana	nucleus	25.47	21.49
GSMUA_Achr4P16120_001	Banana	nucleus	23.86	19.47
GSMUA_Achr7P02770_001	Banana	nucleus	24.66	18.85

Protein Annotations

EnsemblPlants:TraesCS5B01G278600.1	EnsemblPlantsGene:TraesCS5B01G278600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF169	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr5B:-:464327436..464329701

Molecular Weight (calculated)

39174.0 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.486

Length

373 amino acids

Sequence
(BLAST)

001: MDGDYVSGLL MGSAGLDFGV PGLDAGFFET LCGAGGAGLA AMFGDRAAGM PGFGGPFGPA EGGGGGGELG AASREGSSVS DPAWAHGANA RKRKAPAAGA
101: GKGKEAASCF AKMGEPTGPD SKKCKIEDET VRPKVEEEAA TATASDGSAG GERGRKQAKG KGSKSKQPAA DEPPRDYVHV RARRGQATDS HSLAERVRRE
201: KITLKMKMLQ DLVPGCNKVI GKALMLDEII NYVQSLQQQV EFLSMKLSTV NPQLDFDTLS NLLHKDMNQA LGPSASTVFP LESAGTVYPL CDQADLYQSF
301: SSGAMENQCS MGLLDMALPP APQYPFQKQQ QDFWEAGAQN GLHMDHEQSQ ENAGSAPNFD GQLQAADHPE IEF

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.