Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G403900.1 | Wheat | cytosol | 47.45 | 96.75 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 95.86 | 95.25 |
| Os06t0613500-01 | Rice | cytosol, nucleus | 50.64 | 89.33 |
| HORVU7Hr1G094690.1 | Barley | plastid | 64.33 | 81.78 |
| Zm00001d046759_P001 | Maize | plastid | 75.8 | 66.85 |
| Zm00001d036807_P001 | Maize | nucleus | 77.07 | 65.41 |
| OQU76702 | Sorghum | nucleus | 78.03 | 59.76 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 50.32 | 43.29 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 53.18 | 43.15 |
| CDX98249 | Canola | nucleus | 38.22 | 42.86 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 49.68 | 42.62 |
| CDX67710 | Canola | nucleus | 42.99 | 41.93 |
| Bra003300.1-P | Field mustard | nucleus | 42.99 | 41.93 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 47.77 | 41.21 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 17.83 | 40.58 |
| PGSC0003DMT400021130 | Potato | nucleus | 46.18 | 40.28 |
| CDX88966 | Canola | nucleus | 42.04 | 39.76 |
| AT2G42300.1 | Thale cress | nucleus | 41.4 | 39.76 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 36.62 | 39.66 |
| Solyc10g079070.1.1 | Tomato | nucleus | 45.54 | 39.61 |
| CDY06074 | Canola | nucleus | 44.9 | 39.61 |
| KRH71879 | Soybean | nucleus | 44.59 | 39.55 |
| CDX79883 | Canola | nucleus | 37.9 | 39.4 |
| Bra007358.1-P | Field mustard | nucleus | 44.59 | 39.11 |
| Bra004679.1-P | Field mustard | nucleus | 37.58 | 39.07 |
| Bra014603.1-P | Field mustard | nucleus | 42.99 | 39.02 |
| KRH33022 | Soybean | nucleus | 44.27 | 38.94 |
| CDY53497 | Canola | nucleus | 38.22 | 38.84 |
| KRG95332 | Soybean | nucleus | 44.9 | 38.52 |
| CDX71994 | Canola | nucleus | 44.27 | 38.5 |
| KRH67006 | Soybean | nucleus | 44.59 | 35.0 |
| CDY47665 | Canola | cytosol | 27.71 | 33.85 |
| AT3G57800.1 | Thale cress | nucleus | 44.27 | 32.63 |
| TraesCS5B01G457600.1 | Wheat | nucleus, plastid | 21.02 | 25.98 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 27.71 | 24.79 |
| TraesCS5B01G292100.1 | Wheat | nucleus | 21.34 | 24.28 |
| TraesCS7B01G152800.1 | Wheat | nucleus | 28.03 | 22.86 |
| TraesCS4B01G059000.1 | Wheat | nucleus | 23.25 | 22.6 |
| TraesCS7B01G161700.3 | Wheat | nucleus, plastid | 22.93 | 21.49 |
| TraesCS5B01G248600.1 | Wheat | nucleus | 28.66 | 21.23 |
| TraesCS5B01G278600.1 | Wheat | nucleus | 25.16 | 21.18 |
| TraesCS2B01G293300.1 | Wheat | nucleus | 26.11 | 19.57 |
| TraesCS7B01G118800.1 | Wheat | nucleus | 26.75 | 19.09 |
| TraesCS3B01G457400.1 | Wheat | nucleus | 27.07 | 17.93 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G303300.1 | EnsemblPlantsGene:TraesCS7B01G303300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF112 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:541163416..541171385
Molecular Weight (calculated)
33040.0 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.481
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHPSPPPEL PAAGGEIQAM APASAAGSSS TGGSFTALLG LPTSQAIELL LPGAAPAPAP APAFPSDPHL VDRAARFSAF ASPSPSPTPP PAASSAKRKA
101: DPASKGKVAK KGKTTAGGGE EKDSGEDEKP AYVHVRARRG QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTALV LEEIINHVQS LQRQVEYLSM
201: RLAAVNPRVD FGGLDNLLTT ECGRITGLNC KSGMDLEQVS WPDMGVHGAR NLAQLQQQFW HGDLAHPHQP ASQWEKRGDV QPSGFSNTSS SLFGYDLASS
301: GPQQPPTSKL KTEL
101: DPASKGKVAK KGKTTAGGGE EKDSGEDEKP AYVHVRARRG QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTALV LEEIINHVQS LQRQVEYLSM
201: RLAAVNPRVD FGGLDNLLTT ECGRITGLNC KSGMDLEQVS WPDMGVHGAR NLAQLQQQFW HGDLAHPHQP ASQWEKRGDV QPSGFSNTSS SLFGYDLASS
301: GPQQPPTSKL KTEL
001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE NGSLMDGSFN AESYHQLQQW PFDGYHQPEW
301: GREEDHHQAN FSMGSATLHP NQVKMEL
Arabidopsis Description
BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.