Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67710 | Canola | nucleus | 88.21 | 76.71 |
| CDY47665 | Canola | cytosol | 57.14 | 62.26 |
| CDX88966 | Canola | nucleus | 73.21 | 61.75 |
| CDY06074 | Canola | nucleus | 74.29 | 58.43 |
| CDX71994 | Canola | nucleus | 75.0 | 58.17 |
| CDX79883 | Canola | nucleus | 58.93 | 54.64 |
| CDY53497 | Canola | nucleus | 59.64 | 54.05 |
| AT3G57800.1 | Thale cress | nucleus | 80.0 | 52.58 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 55.36 | 42.58 |
| PGSC0003DMT400021130 | Potato | nucleus | 50.71 | 39.44 |
| KRH71879 | Soybean | nucleus | 49.64 | 39.27 |
| KRG95332 | Soybean | nucleus | 51.07 | 39.07 |
| Solyc10g079070.1.1 | Tomato | nucleus | 50.0 | 38.78 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 18.93 | 38.41 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 42.86 | 38.22 |
| KRH33022 | Soybean | nucleus | 48.57 | 38.1 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 42.5 | 37.66 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 48.21 | 36.89 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 47.5 | 36.44 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 49.64 | 35.92 |
| KRH67006 | Soybean | nucleus | 50.71 | 35.5 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 35.71 | 34.48 |
| HORVU7Hr1G094690.1 | Barley | plastid | 30.0 | 34.01 |
| Zm00001d046759_P001 | Maize | plastid | 41.43 | 32.58 |
| Zm00001d036807_P001 | Maize | nucleus | 41.79 | 31.62 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 16.79 | 30.52 |
| CDY18099 | Canola | nucleus | 24.29 | 30.49 |
| CDX76288 | Canola | nucleus | 26.43 | 29.6 |
| CDY08308 | Canola | nucleus | 30.36 | 29.11 |
| OQU76702 | Sorghum | nucleus | 42.5 | 29.02 |
| CDY37979 | Canola | nucleus | 27.14 | 28.57 |
| CDY45806 | Canola | nucleus | 29.64 | 28.33 |
| CDY64034 | Canola | nucleus | 30.71 | 28.01 |
| CDX93427 | Canola | nucleus | 26.79 | 27.99 |
| CDY17466 | Canola | nucleus | 27.5 | 27.7 |
| CDX75440 | Canola | nucleus | 32.5 | 27.66 |
| CDX84885 | Canola | nucleus | 29.29 | 27.61 |
| CDX69067 | Canola | nucleus | 32.5 | 26.76 |
| CDY05670 | Canola | nucleus | 24.64 | 26.74 |
| CDY25986 | Canola | plastid | 20.71 | 26.61 |
| CDX86296 | Canola | nucleus | 25.0 | 25.83 |
| CDX87255 | Canola | nucleus, plastid | 25.71 | 25.71 |
| CDY33821 | Canola | mitochondrion, plastid | 17.86 | 25.51 |
| CDY72360 | Canola | cytosol | 13.57 | 25.33 |
| CDY56230 | Canola | nucleus | 29.29 | 24.62 |
| CDX77488 | Canola | nucleus | 28.57 | 24.32 |
| CDX85122 | Canola | nucleus | 28.57 | 24.17 |
| CDY31048 | Canola | nucleus | 26.43 | 23.57 |
| CDY53834 | Canola | nucleus | 27.86 | 22.48 |
| CDY22605 | Canola | nucleus | 28.21 | 22.38 |
| CDY20659 | Canola | nucleus | 26.43 | 22.22 |
| CDY63738 | Canola | nucleus | 27.14 | 22.22 |
| CDY51061 | Canola | nucleus | 33.21 | 21.48 |
| CDY35923 | Canola | nucleus, plastid | 33.93 | 21.21 |
| CDY28061 | Canola | nucleus | 34.29 | 21.19 |
| CDY45835 | Canola | nucleus | 33.21 | 20.53 |
| CDY61581 | Canola | plastid | 12.86 | 19.67 |
| CDX95974 | Canola | nucleus | 33.57 | 19.62 |
| CDX81575 | Canola | nucleus | 33.21 | 19.58 |
| CDY33568 | Canola | nucleus | 33.57 | 19.5 |
| CDX86297 | Canola | nucleus | 33.93 | 19.39 |
| CDX85347 | Canola | nucleus | 33.57 | 19.14 |
| CDY61420 | Canola | extracellular | 9.29 | 19.12 |
| CDY57925 | Canola | nucleus | 27.14 | 19.1 |
| Os09t0474051-01 | Rice | plastid | 17.5 | 8.38 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078EBT4 | EnsemblPlants:CDX98249 | ProteinID:CDX98249 |
| ProteinID:CDX98249.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00105760001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF419F | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g16100D
Coordinates
chrLK031904:-:9804..12312
Molecular Weight (calculated)
30466.8 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.606
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTGEFEAR SYGGGATREA TRLESLHLGD EFRQLALPPE NAGGFTALLE LPPTQAVNLL RFTDSPSSSS QAAAVTGISP PPLHSYGTLT FPSDSVLMDR
101: AARFSTEHHQ NGNVSGTSSL PSNSSVKTEP AETDSSQAVN NRSGKRKDSD KKAKSWTKKN KSSEENENLP YVHVRARRGQ ATDSHSLAER ARREKINARM
201: KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LASVNPRIDF NLDTILASET ILEHGIGSSA SSLMKKTQGK
101: AARFSTEHHQ NGNVSGTSSL PSNSSVKTEP AETDSSQAVN NRSGKRKDSD KKAKSWTKKN KSSEENENLP YVHVRARRGQ ATDSHSLAER ARREKINARM
201: KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LASVNPRIDF NLDTILASET ILEHGIGSSA SSLMKKTQGK
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.