Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08308 | Canola | nucleus | 90.55 | 95.21 |
| CDY72360 | Canola | cytosol | 32.25 | 66.0 |
| CDX77488 | Canola | nucleus | 64.17 | 59.88 |
| CDY18099 | Canola | nucleus | 43.32 | 59.64 |
| CDX85122 | Canola | nucleus | 63.84 | 59.21 |
| CDY56230 | Canola | nucleus | 62.87 | 57.96 |
| CDY05670 | Canola | nucleus | 31.92 | 37.98 |
| CDY25986 | Canola | plastid | 26.71 | 37.61 |
| CDX86296 | Canola | nucleus | 32.9 | 37.27 |
| CDY33821 | Canola | mitochondrion, plastid | 22.8 | 35.71 |
| CDX76288 | Canola | nucleus | 27.36 | 33.6 |
| CDY37979 | Canola | nucleus | 26.71 | 30.83 |
| CDX98249 | Canola | nucleus | 28.01 | 30.71 |
| CDX93427 | Canola | nucleus | 26.71 | 30.6 |
| CDY45806 | Canola | nucleus | 28.99 | 30.38 |
| CDY17466 | Canola | nucleus | 27.36 | 30.22 |
| CDX84885 | Canola | nucleus | 28.99 | 29.97 |
| CDX87255 | Canola | nucleus, plastid | 26.71 | 29.29 |
| Solyc09g097870.2.1 | Tomato | nucleus | 41.04 | 29.23 |
| PGSC0003DMT400042791 | Potato | nucleus | 41.37 | 28.93 |
| CDX75440 | Canola | nucleus | 30.62 | 28.57 |
| CDX88966 | Canola | nucleus | 30.62 | 28.31 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 12.7 | 28.26 |
| Solyc12g098620.1.1 | Tomato | nucleus | 37.13 | 28.22 |
| CDX79883 | Canola | nucleus | 27.69 | 28.15 |
| PGSC0003DMT400011651 | Potato | nucleus | 37.78 | 28.09 |
| CDX67710 | Canola | nucleus | 29.32 | 27.95 |
| CDX69067 | Canola | nucleus | 30.94 | 27.94 |
| CDY31048 | Canola | nucleus | 28.34 | 27.71 |
| CDY61581 | Canola | plastid | 16.29 | 27.32 |
| CDY53497 | Canola | nucleus | 27.36 | 27.18 |
| CDY20659 | Canola | nucleus | 28.99 | 26.73 |
| CDY51061 | Canola | nucleus | 36.81 | 26.1 |
| CDX71994 | Canola | nucleus | 30.62 | 26.04 |
| CDY53834 | Canola | nucleus | 29.32 | 25.94 |
| CDY06074 | Canola | nucleus | 29.97 | 25.84 |
| CDY22605 | Canola | nucleus | 29.64 | 25.78 |
| CDX86297 | Canola | nucleus | 40.07 | 25.1 |
| CDX85347 | Canola | nucleus | 40.07 | 25.05 |
| CDY61420 | Canola | extracellular | 11.07 | 25.0 |
| CDY28061 | Canola | nucleus | 35.83 | 24.28 |
| CDY63738 | Canola | nucleus | 27.04 | 24.27 |
| CDY35923 | Canola | nucleus, plastid | 34.85 | 23.88 |
| CDY45835 | Canola | nucleus | 34.85 | 23.62 |
| CDY47665 | Canola | cytosol | 19.22 | 22.96 |
| CDX81575 | Canola | nucleus | 34.53 | 22.32 |
| CDY33568 | Canola | nucleus | 34.85 | 22.2 |
| CDX95974 | Canola | nucleus | 34.2 | 21.92 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 36.81 | 20.77 |
| CDY57925 | Canola | nucleus | 26.71 | 20.6 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078JCG1 | UniProt:A0A078JCG1 | EnsemblPlants:CDY64034 |
| ProteinID:CDY64034 | ProteinID:CDY64034.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00040820001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC81C5 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g42050DBnaC06g42050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCG1]
Coordinates
chrLK034390:+:10191..11832
Molecular Weight (calculated)
33994.9 Da
IEP (calculated)
5.720
GRAVY (calculated)
-0.650
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKETEETLN CLLPFGEGND AMMISDFVGR FCDTQEISLH SISDNFPAYP GHFGHSQVQE SNKSSLLVPG SVSGTGKTRP SSRKRKSIRT GNGKESPASS
101: SLTASNSKMQ EENNAAVAGK QNETEKSENN KDEEKPSEPY KDYIHVRARR GQATDSHSIA ERARREKISA RMKLLQDLVP GCNRITGKAV MLDEIINYVQ
201: SLQRQVQFLS MKLATINPRT EFNAANAMLS AEMLQLGESL SCSESRFPSE YLAVGKNILS EGFVQAEAPA FWENDLQSIV HMGFSDCPQQ SINCSESTVQ
301: MKIEPER
101: SLTASNSKMQ EENNAAVAGK QNETEKSENN KDEEKPSEPY KDYIHVRARR GQATDSHSIA ERARREKISA RMKLLQDLVP GCNRITGKAV MLDEIINYVQ
201: SLQRQVQFLS MKLATINPRT EFNAANAMLS AEMLQLGESL SCSESRFPSE YLAVGKNILS EGFVQAEAPA FWENDLQSIV HMGFSDCPQQ SINCSESTVQ
301: MKIEPER
001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
Arabidopsis Description
BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.