Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48560.1 | CDY30379 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY53659 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY55504 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY56346 | AT2G43060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86296 | Canola | nucleus | 75.97 | 72.32 |
| CDY51061 | Canola | nucleus | 87.21 | 51.96 |
| CDY72360 | Canola | cytosol | 25.58 | 44.0 |
| CDX86297 | Canola | nucleus | 79.84 | 42.04 |
| AT5G48560.1 | Thale cress | nucleus | 81.01 | 41.97 |
| CDX85347 | Canola | nucleus | 79.84 | 41.96 |
| CDY25986 | Canola | plastid | 29.84 | 35.32 |
| CDY28061 | Canola | nucleus | 59.69 | 34.0 |
| CDY35923 | Canola | nucleus, plastid | 58.14 | 33.48 |
| CDY08308 | Canola | nucleus | 37.6 | 33.22 |
| CDY64034 | Canola | nucleus | 37.98 | 31.92 |
| CDY33821 | Canola | mitochondrion, plastid | 24.03 | 31.63 |
| CDY18099 | Canola | nucleus | 27.13 | 31.39 |
| CDX77488 | Canola | nucleus | 39.92 | 31.31 |
| CDY37979 | Canola | nucleus | 32.17 | 31.2 |
| CDX85122 | Canola | nucleus | 39.92 | 31.12 |
| CDX93427 | Canola | nucleus | 32.17 | 30.97 |
| CDY56230 | Canola | nucleus | 39.53 | 30.63 |
| CDY61420 | Canola | extracellular | 15.5 | 29.41 |
| CDX76288 | Canola | nucleus | 28.29 | 29.2 |
| CDY45806 | Canola | nucleus | 32.95 | 29.01 |
| CDX84885 | Canola | nucleus | 32.56 | 28.28 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 15.12 | 28.26 |
| CDX87255 | Canola | nucleus, plastid | 30.62 | 28.21 |
| CDY17466 | Canola | nucleus | 29.07 | 26.98 |
| CDY31048 | Canola | nucleus | 31.78 | 26.11 |
| CDX75440 | Canola | nucleus | 32.17 | 25.23 |
| CDY20659 | Canola | nucleus | 32.56 | 25.23 |
| CDX98249 | Canola | nucleus | 26.74 | 24.64 |
| CDX69067 | Canola | nucleus | 32.17 | 24.41 |
| CDX79883 | Canola | nucleus | 27.91 | 23.84 |
| CDY53834 | Canola | nucleus | 31.78 | 23.63 |
| CDY22605 | Canola | nucleus | 31.78 | 23.23 |
| CDX88966 | Canola | nucleus | 29.84 | 23.19 |
| CDX67710 | Canola | nucleus | 28.68 | 22.98 |
| CDY53497 | Canola | nucleus | 27.52 | 22.98 |
| CDY63738 | Canola | nucleus | 30.23 | 22.81 |
| CDY61581 | Canola | plastid | 15.89 | 22.4 |
| KRG99606 | Soybean | nucleus | 50.0 | 22.24 |
| KRH07417 | Soybean | nucleus, plastid | 50.78 | 22.24 |
| CDX71994 | Canola | nucleus | 30.62 | 21.88 |
| KRH66158 | Soybean | nucleus, plastid | 50.0 | 21.72 |
| CDY06074 | Canola | nucleus | 29.84 | 21.63 |
| KRH46615 | Soybean | nucleus | 48.84 | 21.5 |
| CDY57925 | Canola | nucleus | 30.62 | 19.85 |
| CDY45835 | Canola | nucleus | 34.5 | 19.65 |
| CDX81575 | Canola | nucleus | 34.5 | 18.74 |
| CDY33568 | Canola | nucleus | 34.5 | 18.46 |
| CDX95974 | Canola | nucleus | 34.11 | 18.37 |
| CDY47665 | Canola | cytosol | 16.67 | 16.73 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078EUF1 | EnsemblPlants:CDY05670 | ProteinID:CDY05670 |
| ProteinID:CDY05670.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00120665001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDB34A | InterPro:bHLH_dom |
Description
BnaC02g38670D
Coordinates
chrLK031963:-:776270..783171
Molecular Weight (calculated)
29096.5 Da
IEP (calculated)
6.448
GRAVY (calculated)
-0.557
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTHEHDLVS RANVLELAPT NEHVLIRHIL EGFLVTAEGK GGKRRRQDEE KEDNTKAPEP PKDYIHVRAR RGQATDSHSL AERVRREKIG ERMKLLEDLV
101: PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDVMIPTSS NRLHEAGLQA ESLSHHSYNN NSQLHTNVSS CNMMLQSPVN
201: SLETSTLASS FTHLPTLTQF TDSISQYQMF SQEDLQSIVG MGVAHNPNHE SQNMKIEL
101: PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDVMIPTSS NRLHEAGLQA ESLSHHSYNN NSQLHTNVSS CNMMLQSPVN
201: SLETSTLASS FTHLPTLTQF TDSISQYQMF SQEDLQSIVG MGVAHNPNHE SQNMKIEL
001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
Arabidopsis Description
BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.