Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007358.1-P | Field mustard | nucleus | 93.63 | 94.41 |
| CDY06074 | Canola | nucleus | 93.07 | 94.38 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 32.41 | 84.78 |
| CDX67710 | Canola | nucleus | 73.41 | 82.3 |
| CDX88966 | Canola | nucleus | 72.02 | 78.31 |
| CDX98249 | Canola | nucleus | 58.17 | 75.0 |
| AT3G57800.1 | Thale cress | nucleus | 81.44 | 69.01 |
| CDX79883 | Canola | nucleus | 57.06 | 68.21 |
| CDY53497 | Canola | nucleus | 58.17 | 67.96 |
| CDY47665 | Canola | cytosol | 46.81 | 65.76 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 54.29 | 53.85 |
| KRG95332 | Soybean | nucleus | 51.25 | 50.55 |
| KRH71879 | Soybean | nucleus | 48.75 | 49.72 |
| KRH33022 | Soybean | nucleus | 48.48 | 49.02 |
| PGSC0003DMT400021130 | Potato | nucleus | 48.2 | 48.33 |
| Solyc10g079070.1.1 | Tomato | nucleus | 46.81 | 46.81 |
| KRH67006 | Soybean | nucleus | 50.42 | 45.5 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 38.5 | 44.27 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 38.5 | 43.99 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 18.56 | 43.51 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 46.54 | 43.41 |
| HORVU7Hr1G094690.1 | Barley | plastid | 28.81 | 42.11 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 42.11 | 41.64 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 40.44 | 39.89 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 31.3 | 38.97 |
| Zm00001d046759_P001 | Maize | plastid | 36.84 | 37.36 |
| Zm00001d036807_P001 | Maize | nucleus | 37.12 | 36.22 |
| OQU76702 | Sorghum | nucleus | 38.5 | 33.9 |
| CDY72360 | Canola | cytosol | 13.85 | 33.33 |
| CDX76288 | Canola | nucleus | 22.99 | 33.2 |
| CDY08308 | Canola | nucleus | 26.32 | 32.53 |
| CDY18099 | Canola | nucleus | 19.39 | 31.39 |
| CDY17466 | Canola | nucleus | 23.82 | 30.94 |
| CDY05670 | Canola | nucleus | 21.88 | 30.62 |
| CDY64034 | Canola | nucleus | 26.04 | 30.62 |
| CDX75440 | Canola | nucleus | 27.42 | 30.09 |
| CDX93427 | Canola | nucleus | 21.88 | 29.48 |
| CDY25986 | Canola | plastid | 17.73 | 29.36 |
| CDY37979 | Canola | nucleus | 21.61 | 29.32 |
| CDX69067 | Canola | nucleus | 27.42 | 29.12 |
| CDX86296 | Canola | nucleus | 21.61 | 28.78 |
| CDY45806 | Canola | nucleus | 23.27 | 28.67 |
| CDX84885 | Canola | nucleus | 22.99 | 27.95 |
| CDX77488 | Canola | nucleus | 25.21 | 27.66 |
| CDY33821 | Canola | mitochondrion, plastid | 14.96 | 27.55 |
| CDX85122 | Canola | nucleus | 25.21 | 27.49 |
| CDY56230 | Canola | nucleus | 25.21 | 27.33 |
| CDX87255 | Canola | nucleus, plastid | 20.78 | 26.79 |
| CDY31048 | Canola | nucleus | 22.44 | 25.8 |
| CDY20659 | Canola | nucleus | 23.27 | 25.23 |
| CDY28061 | Canola | nucleus | 30.47 | 24.28 |
| CDY51061 | Canola | nucleus | 29.09 | 24.25 |
| CDY35923 | Canola | nucleus, plastid | 29.92 | 24.11 |
| CDY22605 | Canola | nucleus | 23.55 | 24.08 |
| CDY53834 | Canola | nucleus | 22.99 | 23.92 |
| CDY63738 | Canola | nucleus | 22.44 | 23.68 |
| CDY61581 | Canola | plastid | 11.36 | 22.4 |
| CDY45835 | Canola | nucleus | 27.98 | 22.3 |
| CDY61420 | Canola | extracellular | 8.31 | 22.06 |
| CDX95974 | Canola | nucleus | 29.09 | 21.92 |
| CDY33568 | Canola | nucleus | 29.09 | 21.78 |
| CDX81575 | Canola | nucleus | 28.25 | 21.47 |
| CDX86297 | Canola | nucleus | 29.09 | 21.43 |
| CDX85347 | Canola | nucleus | 28.81 | 21.18 |
| CDY57925 | Canola | nucleus | 22.44 | 20.35 |
| Os09t0474051-01 | Rice | plastid | 15.79 | 9.74 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078C753 | EnsemblPlants:CDX71994 | ProteinID:CDX71994 |
| ProteinID:CDX71994.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00155766001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE08FB | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g28800D
Coordinates
chrLK031795:+:1702451..1706034
Molecular Weight (calculated)
39261.2 Da
IEP (calculated)
6.137
GRAVY (calculated)
-0.596
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTGAFGAR SAAVGPCREP PGLESLHIGG GDGGFTALLE LPPTQAVELL HFTDPSLSSS SQAAAAAVAG IGLDVSPPPP LHAYGALTFP SNEALMERAA
101: RFSVMANEQQ QQQNGNVSGE TTTTSSVPSN SDRVKTEPGE TDSSQRLENN RCGKRKELDK KVKGSTKKKS KSSEENEKLP YVHVRARRGQ ATDSHSLAER
201: ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NFDTLLASEN GSLMDGSFNG TAMQLAWPHQ VTETEQSFHH
301: RQLQQLPLPP QQWPYDGLNQ PAWGREEDQD QGNGHSSLMA VSENLMVGSA SLHPNQVKME L
101: RFSVMANEQQ QQQNGNVSGE TTTTSSVPSN SDRVKTEPGE TDSSQRLENN RCGKRKELDK KVKGSTKKKS KSSEENEKLP YVHVRARRGQ ATDSHSLAER
201: ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NFDTLLASEN GSLMDGSFNG TAMQLAWPHQ VTETEQSFHH
301: RQLQQLPLPP QQWPYDGLNQ PAWGREEDQD QGNGHSSLMA VSENLMVGSA SLHPNQVKME L
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.