Factsheet for GSMUA_Achr9P22300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0613500-01	Rice	cytosol, nucleus	27.24	44.38
GSMUA_Achr8P09170_001	Banana	nucleus	17.59	42.15
TraesCS7B01G303300.1	Wheat	nucleus	39.66	36.62
PGSC0003DMT400021130	Potato	nucleus	44.48	35.83
TraesCS7D01G397300.1	Wheat	nucleus, plastid	38.97	35.76
Solyc10g079070.1.1	Tomato	nucleus	44.48	35.73
CDX98249	Canola	nucleus	34.48	35.71
GSMUA_Achr4P19330_001	Banana	nucleus	47.59	35.66
HORVU7Hr1G094690.1	Barley	plastid	30.34	35.63
GSMUA_Achr1P19610_001	Banana	nucleus	44.14	35.07
VIT_08s0007g07870.t01	Wine grape	nucleus	43.45	34.62
KRG95332	Soybean	nucleus	43.45	34.43
GSMUA_Achr7P06330_001	Banana	nucleus	42.76	33.88
TraesCS7A01G403900.1	Wheat	cytosol	17.93	33.77
AT2G42300.1	Thale cress	nucleus	37.93	33.64
KRH33022	Soybean	nucleus	41.38	33.61
CDX67710	Canola	nucleus	37.24	33.54
GSMUA_Achr6P16480_001	Banana	nucleus	18.97	33.54
CDX88966	Canola	nucleus	38.28	33.43
KRH71879	Soybean	nucleus	40.69	33.33
GSMUA_Achr5P24960_001	Banana	nucleus	21.03	33.15
Bra004679.1-P	Field mustard	nucleus	34.48	33.11
CDX79883	Canola	nucleus	34.48	33.11
Bra003300.1-P	Field mustard	nucleus	36.55	32.92
Bra014603.1-P	Field mustard	nucleus	38.28	32.08
CDY53497	Canola	nucleus	34.14	32.04
CDX71994	Canola	nucleus	38.97	31.3
Bra007358.1-P	Field mustard	nucleus	38.62	31.28
KRH67006	Soybean	nucleus	43.1	31.25
CDY06074	Canola	nucleus	38.28	31.18
Zm00001d046759_P001	Maize	plastid	37.93	30.9
Zm00001d036807_P001	Maize	nucleus	39.31	30.81
CDY47665	Canola	cytosol	26.55	29.96
GSMUA_Achr10P...	Banana	nucleus	18.97	29.89
CDY47666	Canola	endoplasmic reticulum, extracellular	13.45	28.26
OQU76702	Sorghum	nucleus	38.97	27.56
AT3G57800.1	Thale cress	nucleus	39.66	27.0
GSMUA_Achr1P27010_001	Banana	nucleus	20.69	26.55
GSMUA_AchrUn_...	Banana	nucleus	21.72	26.03
GSMUA_Achr9P11020_001	Banana	nucleus	21.72	24.42
GSMUA_AchrUn_...	Banana	nucleus	22.76	23.32
GSMUA_Achr6P36210_001	Banana	nucleus	22.07	23.27
GSMUA_Achr10P...	Banana	nucleus	21.72	22.74
GSMUA_Achr2P09660_001	Banana	nucleus	24.14	22.08
GSMUA_Achr9P01040_001	Banana	nucleus	21.38	21.99
GSMUA_Achr9P18510_001	Banana	nucleus	22.76	21.15
GSMUA_Achr6P09050_001	Banana	nucleus	22.76	20.89
GSMUA_Achr9P28060_001	Banana	nucleus	21.72	20.59
GSMUA_Achr9P09770_001	Banana	nucleus	21.03	19.12
GSMUA_Achr7P01750_001	Banana	nucleus	22.07	19.05
GSMUA_Achr8P24490_001	Banana	nucleus	26.55	18.6
GSMUA_Achr3P12130_001	Banana	nucleus	24.14	18.37
GSMUA_Achr10P...	Banana	nucleus	25.17	18.16
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	22.41	17.71
GSMUA_Achr1P09570_001	Banana	nucleus	21.03	17.58
GSMUA_Achr9P07330_001	Banana	nucleus	21.72	17.4
GSMUA_Achr1P19120_001	Banana	nucleus	25.17	17.02
GSMUA_Achr3P02490_001	Banana	nucleus	24.48	16.82
GSMUA_Achr2P06090_001	Banana	nucleus	26.9	16.32
GSMUA_Achr2P21460_001	Banana	nucleus	21.72	16.28
GSMUA_Achr3P13490_001	Banana	nucleus	24.14	16.05
GSMUA_Achr2P21280_001	Banana	nucleus	26.9	15.51
GSMUA_Achr10P...	Banana	nucleus	22.07	15.13
GSMUA_Achr3P10600_001	Banana	nucleus	23.79	14.97
GSMUA_Achr6P27780_001	Banana	nucleus	26.9	14.94
GSMUA_Achr4P16120_001	Banana	nucleus	22.41	14.22
GSMUA_Achr7P22770_001	Banana	nucleus	21.03	13.8
GSMUA_Achr3P17290_001	Banana	plastid	25.52	12.98
GSMUA_Achr7P02770_001	Banana	nucleus	21.72	12.91
GSMUA_Achr10P...	Banana	mitochondrion	23.45	10.33

Protein Annotations

EnsemblPlants:GSMUA_Achr9P22300_001	EnsemblPlants:GSMUA_Achr9T22300_001	EnsemblPlantsGene:GSMUA_Achr9G22300_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF112	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00029515CA	UniProt:M0U2I9	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G22300_001]

Coordinates

chr9:+:27395681..27400851

Molecular Weight (calculated)

31958.5 Da

IEP (calculated)

10.609

GRAVY (calculated)

-0.464

Length

290 amino acids

Sequence
(BLAST)

001: MGSAKGRPVR PSSGVLLASD GSFSALLDLP SDQAVNLLHR LPDPNAVASS GEMRRLCLPP RPKAELLDSA GLRLIAQRSA KRKEGEKSRG ESPAKKSKRR
101: SEEGTACGKK LPCVHVRARR GQATDSHSLA ERARREKINA RMKVLRELVP GCSKISGTTL LLDEIINHIK SLQCLIELLS MRLAAANSRI SFSGPDSSSS
201: VDCGWLTVNN ERSRRVGMEP IEWSSYGGRR QPQQHIWHIN LVHPQQTSRA SEGETPTAPI MGPYSSSAIN LLLFPCQLIQ LKYYFNSRYL

Best Arabidopsis Sequence Match ( AT2G42300.4 )
(BLAST)

001: MDLTQGFRAR SGVVGPVAGL ESLNFSDEFR HLVTTMPPET TGGSFTALLE MPVTQAMELL HFPDSSSSQA RTVTSGDISP TTLHPFGALT FPSNSLLLDR
101: AARFSVIATE QNGNFSGETA NSLPSNPGAN LDRVKAEPAE TDSMVENQNQ SYSSGKRKER EKKVKSSTKK NKSSVESDKL PYVHVRARRG QATDNHSLAE
201: RARREKINAR MKLLQELVPG CDKIQGTALV LDEIINHVQT LQRQVEMLSM RLAAVNPRID FNLDSILASE VSIN

Arabidopsis Description

BHLH48Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.