Factsheet for GSMUA_Achr9P28060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18510_001	Banana	nucleus	59.48	58.33
GSMUA_Achr8P09170_001	Banana	nucleus	19.28	48.76
GSMUA_Achr6P16480_001	Banana	nucleus	22.22	41.46
GSMUA_Achr6P36210_001	Banana	nucleus	36.93	41.09
GSMUA_Achr3P10600_001	Banana	nucleus	60.46	40.13
GSMUA_Achr10P...	Banana	nucleus	22.22	36.96
GSMUA_Achr3P12130_001	Banana	nucleus	45.42	36.48
GSMUA_Achr5P24960_001	Banana	nucleus	21.9	36.41
GSMUA_Achr1P27010_001	Banana	nucleus	25.49	34.51
GSMUA_AchrUn_...	Banana	nucleus	26.8	33.88
GSMUA_Achr1P09570_001	Banana	nucleus	33.66	29.68
GSMUA_AchrUn_...	Banana	nucleus	27.45	29.68
GSMUA_Achr1P19120_001	Banana	nucleus	41.18	29.37
GSMUA_Achr3P13490_001	Banana	nucleus	40.52	28.44
GSMUA_Achr8P24490_001	Banana	nucleus	37.91	28.02
GSMUA_Achr9P11020_001	Banana	nucleus	23.2	27.52
Bra038336.1-P	Field mustard	plastid	31.37	26.3
GSMUA_Achr10P...	Banana	nucleus	23.53	25.99
GSMUA_Achr6P09050_001	Banana	nucleus	26.8	25.95
GSMUA_Achr2P09660_001	Banana	nucleus	26.47	25.55
TraesCS5B01G248600.1	Wheat	nucleus	34.31	24.76
TraesCS5D01G258300.1	Wheat	nucleus	34.31	24.76
KXG35834	Sorghum	nucleus	35.29	24.71
TraesCS5A01G250600.1	Wheat	nucleus	34.31	24.71
Zm00001d020826_P001	Maize	nucleus	34.97	24.65
GSMUA_Achr9P01040_001	Banana	nucleus	22.55	24.47
Os09t0474100-01	Rice	nucleus	33.99	24.3
GSMUA_Achr9P09770_001	Banana	nucleus	25.16	24.14
GSMUA_Achr9P07330_001	Banana	nucleus	27.78	23.48
VIT_01s0010g00740.t01	Wine grape	nucleus	35.95	23.45
OQU81018	Sorghum	nucleus	28.43	23.2
Zm00001d005964_P002	Maize	nucleus	34.31	23.18
GSMUA_Achr1P19610_001	Banana	nucleus	26.8	22.47
GSMUA_Achr7P01750_001	Banana	nucleus	24.18	22.02
GSMUA_Achr9P22300_001	Banana	nucleus	20.59	21.72
PGSC0003DMT400004830	Potato	nucleus	32.68	21.6
GSMUA_Achr3P02490_001	Banana	nucleus	29.74	21.56
Solyc05g010610.2.1	Tomato	nucleus	36.27	21.47
GSMUA_Achr10P...	Banana	nucleus	28.1	21.39
PGSC0003DMT400050585	Potato	nucleus	36.27	21.35
Os08t0487700-00	Rice	nucleus	23.86	21.28
CDY45835	Canola	nucleus	31.37	21.19
CDY33568	Canola	nucleus	33.01	20.95
CDX95974	Canola	nucleus	32.68	20.88
Solyc01g010130.2.1	Tomato	nucleus	36.6	20.86
Bra004348.1-P	Field mustard	nucleus	32.35	20.8
Solyc04g005220.1.1	Tomato	nucleus	28.43	20.76
KRH75189	Soybean	nucleus	36.93	20.55
GSMUA_Achr2P06090_001	Banana	nucleus	31.7	20.29
GSMUA_Achr2P21280_001	Banana	nucleus	33.33	20.28
CDX81575	Canola	nucleus	31.37	20.21
PGSC0003DMT400022704	Potato	nucleus	35.29	20.19
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	24.18	20.16
GSMUA_Achr6P27780_001	Banana	nucleus	34.31	20.11
KRH71031	Soybean	nucleus	35.95	19.96
GSMUA_Achr7P06330_001	Banana	nucleus	23.86	19.95
GSMUA_Achr4P19330_001	Banana	nucleus	25.16	19.9
AT1G68920.1	Thale cress	nucleus	31.37	19.75
GSMUA_Achr2P21460_001	Banana	nucleus	24.84	19.64
GSMUA_Achr10P...	Banana	nucleus	26.14	18.91
GSMUA_Achr7P22770_001	Banana	nucleus	26.8	18.55
GSMUA_Achr4P16120_001	Banana	nucleus	26.47	17.72
GSMUA_Achr7P02770_001	Banana	nucleus	27.12	17.01
GSMUA_Achr3P17290_001	Banana	plastid	29.74	15.96
GSMUA_Achr10P...	Banana	mitochondrion	30.72	14.29

Protein Annotations

EnsemblPlants:GSMUA_Achr9P28060_001	EnsemblPlants:GSMUA_Achr9T28060_001	EnsemblPlantsGene:GSMUA_Achr9G28060_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002952F91	UniProt:M0U463	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G28060_001]

Coordinates

chr9:-:32174508..32177537

Molecular Weight (calculated)

34246.7 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.723

Length

306 amino acids

Sequence
(BLAST)

001: MMNPFDATTS RDNSGAQMQK KNKIDMMEAV RISSLSTDYV SKNGSLMKEQ KDMHHQPNRT GVHQEDPSNL ATAAGNSSSS TTRRRANEIP MEMEEDHEPK
101: SERKSLTVAT VNPKRKQVKD ITESDLVHVR ARHGQATSNH SLAERVRREK INERMKLLQG LVPGCSKVTG KAVMLDEIIN YVQSLQQQVE FLSMKLAAIN
201: PRLDIDREGV LPKYLLQPCN SPSAAAGFSS DIIHPQLHLP HQGLIQSALS GPRNPPDLLG RSIDTQMTAE DGYNMQVSNA WDEELHNVVQ MRCSSSTNLY
301: THRIQQ

Best Arabidopsis Sequence Match ( AT1G26260.3 )
(BLAST)

001: MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV HTDADTSFRD STGLFLQDTQ IPSGSKLDNG PLTDASKLVK ERSINNVSED
101: SQSSGGNGHD DAKCGQTSSK GFSSKKRKRI GKDCEEEEDK KQKDEQSPTS NANKTNSEKQ PSDSLKDGYI HMRARRGQAT NSHSLAERVR REKISERMKF
201: LQDLVPGCDK VTGKAVMLDE IINYVQSLQC QIEFLSMKLS AVNPVLDFNL ESLLAKDALQ SSAPTFPHNM SMLYPPVSYL SQTGFMQPNI SSMSLLSGGL
301: KRQETHGYES DHHNLVHMNH ETGTAPDHED TTADMKVEP

Arabidopsis Description

BHLH76Transcription factor bHLH76 [Source:UniProtKB/Swiss-Prot;Acc:Q9C670]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.