Factsheet for Solyc01g010130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022704	Potato	nucleus	90.69	91.03
Solyc05g010610.2.1	Tomato	nucleus	59.78	62.09
VIT_01s0010g00740.t01	Wine grape	nucleus	47.11	53.94
Solyc04g005220.1.1	Tomato	nucleus	40.6	52.03
Solyc03g113560.2.1	Tomato	cytosol	9.31	49.02
Bra038336.1-P	Field mustard	plastid	31.66	46.58
GSMUA_Achr6P36210_001	Banana	nucleus	23.65	46.18
KRH75189	Soybean	nucleus	46.37	45.27
KRH71031	Soybean	nucleus	46.18	45.01
AT1G68920.1	Thale cress	nucleus	39.66	43.83
Bra004348.1-P	Field mustard	nucleus	38.55	43.49
CDX95974	Canola	nucleus	38.73	43.42
CDY33568	Canola	nucleus	38.92	43.36
CDY45835	Canola	nucleus	36.31	43.05
CDX81575	Canola	nucleus	37.06	41.89
Zm00001d020826_P001	Maize	nucleus	32.59	40.32
TraesCS5D01G258300.1	Wheat	nucleus	31.47	39.86
TraesCS5B01G248600.1	Wheat	nucleus	31.47	39.86
TraesCS5A01G250600.1	Wheat	nucleus	31.47	39.76
KXG35834	Sorghum	nucleus	32.03	39.36
GSMUA_Achr8P24490_001	Banana	nucleus	30.17	39.13
Os09t0474100-01	Rice	nucleus	31.1	39.02
Solyc04g005130.2.1	Tomato	nucleus	16.2	38.33
Os06t0275600-01	Rice	cytosol, nucleus	30.91	37.99
Zm00001d005964_P002	Maize	nucleus	30.91	36.64
GSMUA_Achr9P28060_001	Banana	nucleus	20.86	36.6
GSMUA_Achr9P18510_001	Banana	nucleus	20.86	35.9
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	20.11	35.41
Solyc03g034000.2.1	Tomato	nucleus	17.13	34.59
Solyc09g057710.2.1	Tomato	nucleus	29.61	33.54
Solyc05g006650.2.1	Tomato	nucleus	16.76	33.09
Solyc06g072520.1.1	Tomato	nucleus, plastid	17.5	32.53
Solyc09g097870.2.1	Tomato	nucleus	25.7	32.02
Solyc12g098620.1.1	Tomato	nucleus	23.46	31.19
Solyc04g077480.2.1	Tomato	nucleus	22.16	31.15
Solyc03g097820.1.1	Tomato	nucleus	18.81	30.61
GSMUA_Achr3P10600_001	Banana	nucleus	26.26	30.59
TraesCS7A01G211900.1	Wheat	nucleus	24.21	29.55
TraesCS7D01G213500.1	Wheat	nucleus	24.02	29.32
TraesCS7B01G118800.1	Wheat	nucleus	23.84	29.09
OQU81018	Sorghum	nucleus	20.3	29.07
HORVU0Hr1G020200.1	Barley	nucleus	23.65	28.86
Solyc06g083170.2.1	Tomato	nucleus	24.58	28.45
Solyc01g109700.2.1	Tomato	nucleus	22.53	27.88
Solyc10g079070.1.1	Tomato	nucleus	18.06	26.87
Os08t0487700-00	Rice	nucleus	16.2	25.36

Protein Annotations

EnsemblPlants:Solyc01g010130.2.1	EnsemblPlantsGene:Solyc01g010130.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002761ADC
UniProt:K4ATK8	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:

Description

No Description!

Coordinates

chr1:+:4870120..4873334

Molecular Weight (calculated)

58948.1 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.760

Length

537 amino acids

Sequence
(BLAST)

001: MDMGSKNDTQ GQKRNKDATN FQSPNISLDW QLSGSNLTNA SMGMIPNSNP LVDSVFPTIW DRPPNSSHLG FYGNNNANAQ ISPCIMNQHE TAAIGSVPTR
101: GSMSWNPLNS MLKGAMFVPP IPGMIPQSLA QLPADLGFIE RAARFSCFSG GNFNDMMNRP LSVPESTKPC YRGPAPTWRT EEVLASSGLN SPSAVDPWKQ
201: NIRSGVDGSK DVSLPHENKT HEQSPLKIEK KNEIFARSRD EGKESVGLSG NESDEAECSG RQEEMGSAGL ESSPKSLGSR KRKKYSQGTE HDRMKRVQQL
301: PAEPDKELIE TQKGDGRLHS PSSKHGGKNS KQRSQSSDPP KEDYIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCDKVTGKA VMLDEIINYV
401: QSLQRQVEFL SMKLSTVNPR LDFNLDGVLT KDSQAGPSSA LAFSPDNMTM TYASLHGWQS GLLQSGLPGD GNYIDAFRRS NTQLSSMSGG YRDPSSQVPS
501: VWDDQLHNVV DMGFTSTAPL DCQDLSSLPP DQMKTEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.