Factsheet for Solyc05g006650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058204	Potato	nucleus	95.22	95.93
Solyc04g005130.2.1	Tomato	nucleus	63.6	76.21
Solyc03g113560.2.1	Tomato	cytosol	25.74	68.63
Os07t0193800-01	Rice	endoplasmic reticulum	41.91	54.81
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	40.07	52.66
GSMUA_Achr9P11020_001	Banana	nucleus	48.16	50.78
Zm00001d034503_P002	Maize	nucleus	47.43	50.59
Os03t0802900-01	Rice	nucleus	49.26	50.57
Zm00001d007768_P001	Maize	nucleus	46.32	50.2
EER90712	Sorghum	nucleus	45.59	49.01
TraesCS5D01G459800.1	Wheat	nucleus, plastid	43.75	47.22
TraesCS5B01G457600.1	Wheat	nucleus, plastid	43.38	46.46
GSMUA_Achr7P01750_001	Banana	nucleus	50.37	40.77
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	48.9	36.24
Solyc03g034000.2.1	Tomato	nucleus	29.04	29.7
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	30.51	27.21
Solyc06g072520.1.1	Tomato	nucleus, plastid	28.68	26.99
Solyc03g097820.1.1	Tomato	nucleus	30.88	25.45
Solyc09g097870.2.1	Tomato	nucleus	38.24	24.13
Solyc10g079070.1.1	Tomato	nucleus	30.51	22.99
Solyc12g098620.1.1	Tomato	nucleus	32.35	21.78
Solyc09g057710.2.1	Tomato	nucleus	37.87	21.73
Solyc01g109700.2.1	Tomato	nucleus	33.82	21.2
Solyc06g083170.2.1	Tomato	nucleus	36.03	21.12
Solyc04g077480.2.1	Tomato	nucleus	28.68	20.42
Solyc05g010610.2.1	Tomato	nucleus	31.99	16.83
Solyc01g010130.2.1	Tomato	nucleus	33.09	16.76
Solyc04g005220.1.1	Tomato	nucleus	20.59	13.37

Protein Annotations

EnsemblPlants:Solyc05g006650.2.1	EnsemblPlantsGene:Solyc05g006650.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF305	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002765674	UniProt:K4BWJ1	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

No Description!

Coordinates

chr5:-:1311134..1316254

Molecular Weight (calculated)

29729.6 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.808

Length

272 amino acids

Sequence
(BLAST)

001: MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PLSTAAAPQN VSDDVRNNDP MVLDRRTNNY SGGGGGGAAR KRNEDDESAK GVSTSGNGLT
101: ESASKRMKVT RSNENCEARG DGEGNSVKSA EQPAKPAEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDIVP GCNKVIGKAL VLDEIINYIQ
201: SLQHQVEFLS MKLEAVNSKM PSIEGYPSKD FGQQPFDTNA MAFSSQATRE YTRGTSPDWL HMQLGGGFER TT

Best Arabidopsis Sequence Match ( AT1G59640.1 )
(BLAST)

001: MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFVGP NQFGDADLTT AANGDPARMS HALSQAVIEG ISGAWKRRED ESKSAKIVST IGASEGENKR
101: QKIDEVCDGK AEAESLGTET EQKKQQMEPT KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS
201: MKLEAVNSRM NPGIEVFPPK EFGQQAFENP EIQFGSQSTR EYSRGASPEW LHMQIGSGGF ERTS

Arabidopsis Description

BPETranscription factor BPE [Source:UniProtKB/Swiss-Prot;Acc:Q0JXE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.