Factsheet for Solyc04g005220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004830	Potato	nucleus	78.04	70.63
Solyc05g010610.2.1	Tomato	nucleus	56.8	46.03
Solyc01g010130.2.1	Tomato	nucleus	52.03	40.6
Solyc03g113560.2.1	Tomato	cytosol	9.79	40.2
VIT_01s0010g00740.t01	Wine grape	nucleus	43.68	39.02
KRH71031	Soybean	nucleus	46.06	35.03
Bra038336.1-P	Field mustard	plastid	30.31	34.79
KRH75189	Soybean	nucleus	45.35	34.55
GSMUA_Achr6P36210_001	Banana	nucleus	21.72	33.09
Bra004348.1-P	Field mustard	nucleus	36.28	31.93
CDX81575	Canola	nucleus	36.04	31.79
CDY33568	Canola	nucleus	36.52	31.74
CDX95974	Canola	nucleus	36.28	31.73
CDY45835	Canola	nucleus	33.89	31.35
AT1G68920.1	Thale cress	nucleus	36.04	31.07
Os06t0275600-01	Rice	cytosol, nucleus	29.83	28.6
GSMUA_Achr9P28060_001	Banana	nucleus	20.76	28.43
Zm00001d020826_P001	Maize	nucleus	29.12	28.11
Os09t0474100-01	Rice	nucleus	28.64	28.04
KXG35834	Sorghum	nucleus	29.12	27.92
TraesCS5B01G248600.1	Wheat	nucleus	27.92	27.59
TraesCS5A01G250600.1	Wheat	nucleus	27.92	27.53
Zm00001d005964_P002	Maize	nucleus	29.59	27.37
TraesCS5D01G258300.1	Wheat	nucleus	27.68	27.36
GSMUA_Achr9P18510_001	Banana	nucleus	19.33	25.96
Solyc03g034000.2.1	Tomato	nucleus	15.99	25.19
Solyc02g062690.2.1	Tomato	mitochondrion, nucleus	17.9	24.59
GSMUA_Achr8P24490_001	Banana	nucleus	23.87	24.15
Solyc09g097870.2.1	Tomato	nucleus	23.63	22.97
Solyc04g077480.2.1	Tomato	nucleus	20.76	22.77
Solyc04g005130.2.1	Tomato	nucleus	12.17	22.47
Solyc06g072520.1.1	Tomato	nucleus, plastid	15.27	22.15
Solyc12g098620.1.1	Tomato	nucleus	21.24	22.03
Solyc09g057710.2.1	Tomato	nucleus	24.58	21.73
GSMUA_Achr3P10600_001	Banana	nucleus	23.15	21.04
Solyc03g097820.1.1	Tomato	nucleus	16.47	20.91
OQU81018	Sorghum	nucleus	18.62	20.8
Solyc05g006650.2.1	Tomato	nucleus	13.37	20.59
TraesCS7B01G118800.1	Wheat	nucleus	20.29	19.32
TraesCS7A01G211900.1	Wheat	nucleus	20.05	19.09
Solyc01g109700.2.1	Tomato	nucleus	19.57	18.89
HORVU0Hr1G020200.1	Barley	nucleus	19.81	18.86
TraesCS7D01G213500.1	Wheat	nucleus	19.81	18.86
Solyc10g079070.1.1	Tomato	nucleus	16.23	18.84
Solyc06g083170.2.1	Tomato	nucleus	20.76	18.75
Os08t0487700-00	Rice	nucleus	13.37	16.33

Protein Annotations

EnsemblPlants:Solyc04g005220.1.1	EnsemblPlantsGene:Solyc04g005220.1	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00027661BD	UniProt:K4BNC8
MapMan:15.5.32	MapMan:26.1.2.1.2	:	:	:	:

Description

No Description!

Coordinates

chr4:+:176776..179094

Molecular Weight (calculated)

45914.1 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.485

Length

419 amino acids

Sequence
(BLAST)

001: MNIVSMDDAE PKDWQFSGSN LINASNRIID SFCVSVWGNP ISLSNVGLCG TNIPMNPGAA TVLDWTQPNA MSKGGTFSMV PQSLTQLTAD SEKVGDMMNP
101: FAIPNSFNTY HNGLIFGESQ DVFDSPSTAI SQKKQMRNAV ESSDQDVPLP LEYEHTDRSP LKNDKNVNFV KSQGEAKECV GISENESECS GHQEEVEGGY
201: SSARCLGSRK RKRSGQDAEF DQMNGAQQQP AELAKEQNLN SILRREKISE RMKFLQDLVP GCNKREPVIS QVTGKAVMLD EIINYVQSLQ RQVEMKLATI
301: NPRLDFNIDA LLAKEILHSR AGTSSSLAFA PDLTVPYQSS HQLQRGLVHS GLPGSGNSID TLLKSIYPFL AVTSGGYKER SSQLPNDELH NVVEMGLCTS
401: APLHIREGSL PSGQMKEEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.